当前解析结果
SmilChr06G001480| 统一新 Gene ID | SmilChr06G001480 |
|---|---|
| 名称 | SmilChr06G001480 |
| 描述 | zeatin O-xylosyltransferase-like |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 15784613 - 15786263 / - |
| NCBI Gene ID | LOC130990165 |
|---|---|
| GeneID | 130990165 |
| locus_tag | - |
| NCBI Name | LOC130990165 |
| 原始查询 | SmilChr06G001480 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | zeatin O-xylosyltransferase-like |
| 产物 | zeatin O-xylosyltransferase-like |
| Arabidopsis | AT2G31790 (AT2G31790)UDP-Glycosyltransferase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:817736] identity=28.4; qcov=1.03; evalue=1.39e-52; confidence=low |
| Rice | Os04g0565400 (CZOGT3)- identity=41.1; qcov=1.03; evalue=2.19e-104; confidence=medium |
| GO | GO:0008194 (UDP-glycosyltransferase activity) |
| KEGG | smil00908 (Zeatin biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00201 (UDPGT); PF26168 (Glyco_transf_N) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130990165 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 1.00000 | XP_057770363.1 |
| 2 | Cytoplasm | 细胞质 | 0.60000 | XP_057770363.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057770363.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057770363.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057770363.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:15784763 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B14,B52,B64,C49,D5 |
Chr6:15784872 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B103,B38,C14,C18 |
Chr6:15784895 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr6:15784905 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B38,C14,C18 |
Chr6:15784917 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B103,B38,C14,C18 |
Chr6:15784919 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B1 |
Chr6:15785039 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B14,C34,C75 |
Chr6:15785124 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B113 |
Chr6:15785174 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B77 |
Chr6:15785177 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B77 |
Chr6:15785262 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | C27,C46,D4 |
Chr6:15785264 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B14,C34,C75 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057770363.1PF26168
Glyco_transf_N 15-243 aa
PF00201
UDPGT 261-384 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057770363.1 |
Pfam | PF26168 |
Glyco_transf_N | Domain | 15 | 243 | 1.5e-72 | 245.0 | Glycosyltransferase, N-terminal domain |
XP_057770363.1 |
Pfam | PF00201 |
UDPGT | Family | 261 | 384 | 4e-20 | 72.8 | UDP-glucoronosyl and UDP-glucosyl transferase |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。