当前解析结果
SmilChr06G001642| 统一新 Gene ID | SmilChr06G001642 |
|---|---|
| 名称 | SmilChr06G001642 |
| 描述 | beta-glucosidase 44-like |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 18563796 - 18570273 / + |
| NCBI Gene ID | LOC130990302 |
|---|---|
| GeneID | 130990302 |
| locus_tag | - |
| NCBI Name | LOC130990302 |
| 原始查询 | SmilChr06G001642 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | beta-glucosidase 44-like |
| 产物 | beta-glucosidase 44-like |
| Arabidopsis | AT3G18080 (BGLU44)B-S glucosidase 44 [Source:NCBI gene (formerly Entrezgene);Acc:821333] identity=75; qcov=0.957; evalue=0; confidence=high |
| Rice | Os01g0508000 (Os1bglu1)- identity=71.9; qcov=0.914; evalue=0; confidence=high |
| GO | GO:0005975 (carbohydrate metabolic process); GO:0008422 (beta-glucosidase activity) |
| KEGG | smil00460 (Cyanoamino acid metabolism - Salvia miltiorrhiza (redroot sage)); smil00500 (Starch and sucrose metabolism - Salvia miltiorrhiza (redroot sage)); smil00999 (Biosynthesis of various plant secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00232 (Glyco_hydro_1) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130990302 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Vacuole | 液泡 | 0.80000 | XP_057770502.1 |
| 2 | Secreted | 分泌到胞外 | 0.40000 | XP_057770502.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057770502.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057770502.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057770502.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:18563928 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A10,B35,B80 |
Chr6:18564040 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A2,C42 |
Chr6:18564046 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C14 |
Chr6:18564085 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A2,C42 |
Chr6:18566077 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B84 |
Chr6:18566088 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B47,C46 |
Chr6:18567721 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A19,B28 |
Chr6:18567891 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B125,C26,C87 |
Chr6:18568067 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C17 |
Chr6:18568805 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B96,C85 |
Chr6:18568865 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C27,D4 |
Chr6:18568904 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B84 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057770502.1PF00232
Glyco_hydro_1 43-510 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057770502.1 |
Pfam | PF00232 |
Glyco_hydro_1 | Domain | 43 | 510 | 2.2e-156 | 521.7 | Glycosyl hydrolase family 1 |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。