当前解析结果
SmilChr06G001672| 统一新 Gene ID | SmilChr06G001672 |
|---|---|
| 名称 | SmilChr06G001672 |
| 描述 | zinc finger BED domain-containing protein DAYSLEEPER-like |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 18986269 - 18988166 / - |
| NCBI Gene ID | LOC130990330 |
|---|---|
| GeneID | 130990330 |
| locus_tag | - |
| NCBI Name | LOC130990330 |
| 原始查询 | SmilChr06G001672 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | zinc finger BED domain-containing protein DAYSLEEPER-like |
| 产物 | zinc finger BED domain-containing protein DAYSLEEPER-like |
| Arabidopsis | AT3G42170 (DAYSLEEPER)BED zinc finger and hAT dimerization domain-containing protein DAYSLEEPER [Source:NCBI gene (formerly Entrezgene);Acc:3769417] identity=32.2; qcov=0.878; evalue=6.81e-42; confidence=low |
| Rice | Os12g0521300- identity=34.9; qcov=0.888; evalue=4.19e-54; confidence=low |
| GO | GO:0003677 (DNA binding); GO:0046983 (protein dimerization activity) |
| KEGG | - |
| Pfam | PF05699 (Dimer_Tnp_hAT); PF14372 (hAT-like_RNase-H) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130990330 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057770523.1 |
| 2 | Cytoplasm | 细胞质 | 0.20000 | XP_057770523.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057770523.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057770523.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057770523.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:18986438 |
G |
A |
EMS_canonical_SNV | stop_gained | 13 | B106,B127,B3,B69,B8,B87,B89,C10,C41,C71,C72,C73,C9 |
Chr6:18986443 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B71,C78 |
Chr6:18986464 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B140 |
Chr6:18986475 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B137,B96,C41 |
Chr6:18986485 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B42 |
Chr6:18986571 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B43 |
Chr6:18986578 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B140,B79 |
Chr6:18986583 |
G |
A |
EMS_canonical_SNV | stop_gained | 2 | B140,B53 |
Chr6:18986583 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B140,B53 |
Chr6:18986601 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B5,B65,B71 |
Chr6:18986625 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | C19,C56,C77 |
Chr6:18986636 |
C |
T |
EMS_canonical_SNV | stop_gained | 6 | A7,B40,C14,C20,C34,C63 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057770523.1PF14372
hAT-like_RNase-H 64-159 aa
PF05699
Dimer_Tnp_hAT 205-289 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057770523.1 |
Pfam | PF14372 |
hAT-like_RNase-H | Domain | 64 | 159 | 3.1e-17 | 63.3 | hAT-like transposase, RNase-H fold |
XP_057770523.1 |
Pfam | PF05699 |
Dimer_Tnp_hAT | Domain | 205 | 289 | 8.7e-30 | 103.1 | hAT family C-terminal dimerisation region |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。