当前解析结果
SmilChr06G002788| 统一新 Gene ID | SmilChr06G002788 |
|---|---|
| 名称 | SmilChr06G002788 |
| 描述 | structural maintenance of chromosomes protein 4-like |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 40565263 - 40575199 / + |
| NCBI Gene ID | LOC130989536 |
|---|---|
| GeneID | 130989536 |
| locus_tag | - |
| NCBI Name | LOC130989536 |
| 原始查询 | SmilChr06G002788 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | structural maintenance of chromosomes protein 4-like |
| 产物 | structural maintenance of chromosomes protein 4-like |
| Arabidopsis | AT5G48600 (SMC3)structural maintenance of chromosome 3 [Source:NCBI gene (formerly Entrezgene);Acc:834917] identity=71.5; qcov=0.993; evalue=0; confidence=high |
| Rice | Os05g0497150 (SMC4)- identity=69; qcov=0.409; evalue=0; confidence=low |
| GO | GO:0005515 (protein binding); GO:0005524 (ATP binding); GO:0005694 (chromosome); GO:0007076 (mitotic chromosome condensation); GO:0016887 (ATP hydrolysis activity) |
| KEGG | - |
| Pfam | PF02463 (SMC_N); PF06470 (SMC_hinge); PF13304 (AAA_21); PF13476 (AAA_23) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130989536 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057769491.1 |
| 2 | Chromosome | 染色体 | 0.60000 | XP_057769491.1 |
| 3 | Cytoplasm | 细胞质 | 0.60000 | XP_057769491.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057769491.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057769491.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:40565762 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B21,C20,C69 |
Chr6:40568122 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B47,C55,C82 |
Chr6:40569472 |
GA |
G |
1bp_deletion | frameshift_variant | 2 | C18,C86 |
Chr6:40569472 |
GA |
G |
1bp_deletion | CDS_variant | 2 | C18,C86 |
Chr6:40569494 |
TG |
T |
1bp_deletion | frameshift_variant | 1 | C55 |
Chr6:40569494 |
TG |
T |
1bp_deletion | CDS_variant | 1 | C55 |
Chr6:40569497 |
AGC |
A |
2bp_deletion | frameshift_variant | 1 | C55 |
Chr6:40569497 |
AGC |
A |
2bp_deletion | CDS_variant | 1 | C55 |
Chr6:40574732 |
TG |
T |
1bp_deletion | frameshift_variant | 1 | B126 |
Chr6:40574732 |
TG |
T |
1bp_deletion | CDS_variant | 1 | B126 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057769491.1PF02463
SMC_N 5-1189 aa
PF13476
AAA_23 10-254 aa
PF13304
AAA_21 14-89 aa
PF06470
SMC_hinge 519-635 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057769491.1 |
Pfam | PF02463 |
SMC_N | Domain | 5 | 1189 | 4.2e-66 | 223.2 | RecF/RecN/SMC N terminal domain |
XP_057769491.1 |
Pfam | PF13476 |
AAA_23 | Domain | 10 | 254 | 1.6e-08 | 36.2 | AAA domain |
XP_057769491.1 |
Pfam | PF13304 |
AAA_21 | Domain | 14 | 89 | 2.4e-10 | 41.6 | AAA domain, putative AbiEii toxin, Type IV TA system |
XP_057769491.1 |
Pfam | PF06470 |
SMC_hinge | Domain | 519 | 635 | 4.2e-21 | 76.2 | SMC proteins Flexible Hinge Domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。