当前解析结果
SmilChr07G000464| 统一新 Gene ID | SmilChr07G000464 |
|---|---|
| 名称 | SmilChr07G000464 |
| 描述 | beta-D-glucosyl crocetin beta-1,6-glucosyltransferase-like |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 3268767 - 3270119 / - |
| NCBI Gene ID | LOC130993054 |
|---|---|
| GeneID | 130993054 |
| locus_tag | - |
| NCBI Name | LOC130993054 |
| 原始查询 | SmilChr07G000464 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | beta-D-glucosyl crocetin beta-1,6-glucosyltransferase-like |
| 产物 | beta-D-glucosyl crocetin beta-1%2C6-glucosyltransferase-like |
| Arabidopsis | AT5G65550 (AT5G65550)UDP-Glycosyltransferase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:836681] identity=29.5; qcov=1; evalue=1.82e-56; confidence=low |
| Rice | Os07g0672700- identity=39.8; qcov=1.03; evalue=1.61e-100; confidence=medium |
| GO | GO:0008194 (UDP-glycosyltransferase activity) |
| KEGG | - |
| Pfam | PF00201 (UDPGT); PF26168 (Glyco_transf_N) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130993054 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057773757.1 |
| 2 | Cytosol | 细胞质基质 | 1.00000 | XP_057773757.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057773757.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057773757.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057773757.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:3268771 |
CT |
C |
1bp_deletion | frameshift_variant | 2 | A13,B137 |
Chr7:3268771 |
CT |
C |
1bp_deletion | CDS_variant | 2 | A13,B137 |
Chr7:3268867 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A4 |
Chr7:3268869 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B30 |
Chr7:3268963 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A4,B130,C28,C68,C81 |
Chr7:3268964 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A4,B130,C28,C68,C81 |
Chr7:3268986 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A6,C4,C86 |
Chr7:3269136 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B124 |
Chr7:3269140 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B120,B16,B61,C62,D2 |
Chr7:3269182 |
A |
AAT |
2bp_insertion | frameshift_variant | 6 | A21,B140,B80,C33,C46,C51 |
Chr7:3269183 |
GCT |
G |
2bp_deletion | frameshift_variant | 6 | A21,B140,B80,C33,C46,C51 |
Chr7:3269190 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B93,C74 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057773757.1PF26168
Glyco_transf_N 7-223 aa
PF00201
UDPGT 266-386 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057773757.1 |
Pfam | PF26168 |
Glyco_transf_N | Domain | 7 | 223 | 2.2e-11 | 44.8 | Glycosyltransferase, N-terminal domain |
XP_057773757.1 |
Pfam | PF00201 |
UDPGT | Family | 266 | 386 | 6.7e-27 | 95.2 | UDP-glucoronosyl and UDP-glucosyl transferase |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。