当前解析结果
SmilChr07G000686| 统一新 Gene ID | SmilChr07G000686 |
|---|---|
| 名称 | SmilChr07G000686 |
| 描述 | hydroxyethylthiazole kinase |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 4687882 - 4689985 / + |
| NCBI Gene ID | LOC130991880 |
|---|---|
| GeneID | 130991880 |
| locus_tag | - |
| NCBI Name | LOC130991880 |
| 原始查询 | SmilChr07G000686 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hydroxyethylthiazole kinase |
| 产物 | hydroxyethylthiazole kinase |
| Arabidopsis | AT3G24030 (AT3G24030)hydroxyethylthiazole kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:821988] identity=62; qcov=0.905; evalue=3.17e-121; confidence=high |
| Rice | Os01g0363600- identity=59; qcov=0.432; evalue=5.62e-39; confidence=low |
| GO | GO:0000287 (magnesium ion binding); GO:0004417 (hydroxyethylthiazole kinase activity); GO:0005524 (ATP binding); GO:0009228 (thiamine biosynthetic process) |
| KEGG | smil00730 (Thiamine metabolism - Salvia miltiorrhiza (redroot sage)); smil00740 (Riboflavin metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01240 (Biosynthesis of cofactors - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF02110 (HK) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130991880 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057772304.1 |
| 2 | Cytosol | 细胞质基质 | 0.80000 | XP_057772304.1 |
| 3 | Peroxisome | 过氧化物酶体 | 0.20000 | XP_057772304.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057772304.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057772304.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:4688148 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B125,B44 |
Chr7:4688326 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B41,B44,C10,C42 |
Chr7:4688327 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B104,C65 |
Chr7:4688331 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B34,B85 |
Chr7:4688363 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B93 |
Chr7:4688400 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B123,B129,C14,C73 |
Chr7:4688538 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B91,C64,C66 |
Chr7:4688564 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C47 |
Chr7:4688573 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B12,B40 |
Chr7:4689555 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B17,B67,C13,D5 |
Chr7:4689611 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B17,B67,C13,D5 |
Chr7:4689673 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057772304.1PF02110
HK 42-280 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057772304.1 |
Pfam | PF02110 |
HK | Domain | 42 | 280 | 6.8e-71 | 239.2 | Hydroxyethylthiazole kinase family |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。