当前解析结果
SmilChr07G000972| 统一新 Gene ID | SmilChr07G000972 |
|---|---|
| 名称 | SmilChr07G000972 |
| 描述 | probable inactive receptor kinase At2g26730 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 7045706 - 7048433 / + |
| NCBI Gene ID | LOC130992122 |
|---|---|
| GeneID | 130992122 |
| locus_tag | - |
| NCBI Name | LOC130992122 |
| 原始查询 | SmilChr07G000972 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | probable inactive receptor kinase At2g26730 |
| 产物 | probable inactive receptor kinase At2g26730 |
| Arabidopsis | AT2G26730 (AT2G26730)Leucine-rich repeat protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:817214] identity=33; qcov=1.05; evalue=3.42e-95; confidence=low |
| Rice | Os09g0376600- identity=39; qcov=1.07; evalue=4.07e-114; confidence=medium |
| GO | GO:0004672 (protein kinase activity); GO:0005515 (protein binding); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF00560 (LRR_1); PF07714 (PK_Tyr_Ser-Thr) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130992122 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057772615.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057772615.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057772615.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057772615.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057772615.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:7045967 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B38,B39 |
Chr7:7046145 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B80,C1 |
Chr7:7046170 |
TGC |
T |
2bp_deletion | frameshift_variant | 1 | B75 |
Chr7:7046170 |
TGC |
T |
2bp_deletion | CDS_variant | 1 | B75 |
Chr7:7046230 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B80 |
Chr7:7046259 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B123 |
Chr7:7046334 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr7:7046375 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B82 |
Chr7:7046509 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B115,B20,B49 |
Chr7:7046520 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B63,B86 |
Chr7:7046746 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B118 |
Chr7:7046747 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C37 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057772615.1PF00560
LRR_1 103-125 aa
PF00560
LRR_1 127-149 aa
PF00560
LRR_1 151-168 aa
PF07714
PK_Tyr_Ser-Thr 357-497 aa
PF00069
Pkinase 358-499 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057772615.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 103 | 125 | 1.2e-10 | 40.0 | Leucine Rich Repeat |
XP_057772615.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 127 | 149 | 1.2e-10 | 40.0 | Leucine Rich Repeat |
XP_057772615.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 151 | 168 | 1.2e-10 | 40.0 | Leucine Rich Repeat |
XP_057772615.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 357 | 497 | 1.8e-13 | 51.2 | Protein tyrosine and serine/threonine kinase |
XP_057772615.1 |
Pfam | PF00069 |
Pkinase | Domain | 358 | 499 | 5.2e-13 | 49.7 | Protein kinase domain |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。