当前解析结果
SmilChr07G001227| 统一新 Gene ID | SmilChr07G001227 |
|---|---|
| 名称 | SmilChr07G001227 |
| 描述 | chlorophyll a-b binding protein CP29.1, chloroplastic-like |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 9408883 - 9410566 / - |
| NCBI Gene ID | LOC130992405 |
|---|---|
| GeneID | 130992405 |
| locus_tag | - |
| NCBI Name | LOC130992405 |
| 原始查询 | SmilChr07G001227 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | chlorophyll a-b binding protein CP29.1, chloroplastic-like |
| 产物 | chlorophyll a-b binding protein CP29.1%2C chloroplastic-like |
| Arabidopsis | AT3G08940 (LHCB4.2)light harvesting complex photosystem II [Source:NCBI gene (formerly Entrezgene);Acc:820043] identity=85.35; qcov=0.951; evalue=3.79e-174; confidence=high |
| Rice | Os07g0558400 (CP29)- identity=85.87; qcov=0.955; evalue=1.87e-167; confidence=high |
| GO | GO:0009416 (response to light stimulus); GO:0009535 (chloroplast thylakoid membrane); GO:0009768 (photosynthesis, light harvesting in photosystem I); GO:0009941 (chloroplast envelope); GO:0010287 (plastoglobule) |
| KEGG | smil00196 (Photosynthesis - antenna proteins - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00504 (Chloroa_b-bind) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130992405 |
| Rank | 定位位置 | 中文 | 五折投票比例 | Protein ID |
|---|---|---|---|---|
| 1 | Chloroplast | 叶绿体 | 1.00000 | XP_057773007.1 |
| 2 | Chloroplast thylakoid | 类囊体 | 1.00000 | XP_057773007.1 |
| 3 | Chloroplast thylakoid membrane | 类囊体膜 | 1.00000 | XP_057773007.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:9409122 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D7 |
Chr7:9409123 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B121,B41,C10,C42 |
Chr7:9409778 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B74 |
Chr7:9409886 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C63,D7 |
Chr7:9409907 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr7:9410036 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A19 |
Chr7:9410054 |
GC |
G |
1bp_deletion | frameshift_variant | 1 | B12 |
Chr7:9410054 |
GC |
G |
1bp_deletion | CDS_variant | 1 | B12 |
Chr7:9410057 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B12 |
Chr7:9410096 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C10 |
Chr7:9410111 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B65 |
Chr7:9410141 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B133,B44 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057773007.1PF00504
Chloroa_b-bind 59-255 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057773007.1 |
Pfam | PF00504 |
Chloroa_b-bind | Family | 59 | 255 | 2.9e-44 | 152.2 | Chlorophyll A-B binding protein |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。