当前解析结果
SmilChr07G002179| 统一新 Gene ID | SmilChr07G002179 |
|---|---|
| 名称 | SmilChr07G002179 |
| 描述 | alanine--tRNA ligase-like |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 19957849 - 19967643 / - |
| NCBI Gene ID | LOC130993261 |
|---|---|
| GeneID | 130993261 |
| locus_tag | - |
| NCBI Name | LOC130993261 |
| 原始查询 | SmilChr07G002179 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | alanine--tRNA ligase-like |
| 产物 | alanine--tRNA ligase-like |
| Arabidopsis | AT1G50200 (ALATS)Alanyl-tRNA synthetase [Source:NCBI gene (formerly Entrezgene);Acc:841442] identity=74.6; qcov=0.923; evalue=0; confidence=high |
| Rice | Os10g0182000- identity=68.3; qcov=0.921; evalue=0; confidence=high |
| GO | GO:0002161 (aminoacyl-tRNA deacylase activity); GO:0003676 (nucleic acid binding); GO:0004813 (alanine-tRNA ligase activity); GO:0005524 (ATP binding); GO:0005737 (cytoplasm); GO:0005739 (mitochondrion); GO:0006400 (tRNA modification); GO:0006419 (alanyl-tRNA aminoacylation); GO:0009507 (chloroplast); GO:0016597 (amino acid binding) |
| KEGG | smil00970 (Aminoacyl-tRNA biosynthesis - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF01411 (tRNA-synt_2c); PF02272 (DHHA1); PF07973 (tRNA_SAD) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130993261 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Chloroplast | 叶绿体 | 1.00000 | XP_057774070.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057774070.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057774070.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057774070.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057774070.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:19958002 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B72,C46 |
Chr7:19958362 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B137,B81,C35 |
Chr7:19958416 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A19,B28,C12 |
Chr7:19960368 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A19,B28,C12,D10 |
Chr7:19961712 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B48 |
Chr7:19963594 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A14,B103 |
Chr7:19963603 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D3 |
Chr7:19963651 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B31,D6 |
Chr7:19966620 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B72,D1 |
Chr7:19967454 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B49,C24,C32,C68 |
Chr7:19967460 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B99 |
Chr7:19967536 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A14 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057774070.1PF01411
tRNA-synt_2c 91-666 aa
PF07973
tRNA_SAD 764-822 aa
PF02272
DHHA1 921-1026 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057774070.1 |
Pfam | PF01411 |
tRNA-synt_2c | Family | 91 | 666 | 1.5e-218 | 727.6 | tRNA synthetases class II (A) |
XP_057774070.1 |
Pfam | PF07973 |
tRNA_SAD | Domain | 764 | 822 | 2.9e-13 | 50.3 | Threonyl and Alanyl tRNA synthetase second additional domain |
XP_057774070.1 |
Pfam | PF02272 |
DHHA1 | Domain | 921 | 1026 | 3.3e-12 | 47.5 | DHHA1 domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。