当前解析结果
SmilChr07G002570| 统一新 Gene ID | SmilChr07G002570 |
|---|---|
| 名称 | SmilChr07G002570 |
| 描述 | CBL-interacting serine/threonine-protein kinase 12-like |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 24540834 - 24542445 / - |
| NCBI Gene ID | LOC130993638 |
|---|---|
| GeneID | 130993638 |
| locus_tag | - |
| NCBI Name | LOC130993638 |
| 原始查询 | SmilChr07G002570 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | CBL-interacting serine/threonine-protein kinase 12-like |
| 产物 | CBL-interacting serine/threonine-protein kinase 12-like |
| Arabidopsis | AT4G18700 (CIPK12)CBL-interacting protein kinase 12 [Source:NCBI gene (formerly Entrezgene);Acc:827604] identity=81; qcov=0.742; evalue=2.14e-88; confidence=high |
| Rice | Os05g0332300 (OsCIPK18)- identity=73.5; qcov=0.728; evalue=3.36e-81; confidence=high |
| GO | GO:0004672 (protein kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF01163 (RIO1); PF03109 (ABC1); PF06293 (Kdo); PF07714 (PK_Tyr_Ser-Thr) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130993638 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 1.00000 | XP_057774584.1 |
| 2 | Cytoplasm | 细胞质 | 0.80000 | XP_057774584.1 |
| 3 | Nucleus | 细胞核 | 0.60000 | XP_057774584.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057774584.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057774584.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:24541702 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B7 |
Chr7:24541729 |
ATT |
* |
2bp_deletion | CDS_variant | 5 | A19,B19,B31,B83,C67 |
Chr7:24541774 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B137 |
Chr7:24541832 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B27,B44,D7 |
Chr7:24541858 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C32 |
Chr7:24542205 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D6 |
Chr7:24542250 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B53,B57,C87 |
Chr7:24542275 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B8 |
Chr7:24542299 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A11,B53,B57,C87 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057774584.1PF00069
Pkinase 33-179 aa
PF07714
PK_Tyr_Ser-Thr 35-178 aa
PF01163
RIO1 46-174 aa
PF03109
ABC1 99-178 aa
PF06293
Kdo 120-170 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057774584.1 |
Pfam | PF00069 |
Pkinase | Domain | 33 | 179 | 8.4e-46 | 157.2 | Protein kinase domain |
XP_057774584.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 35 | 178 | 4.8e-27 | 95.6 | Protein tyrosine and serine/threonine kinase |
XP_057774584.1 |
Pfam | PF01163 |
RIO1 | Domain | 46 | 174 | 1.2e-06 | 29.0 | RIO domain |
XP_057774584.1 |
Pfam | PF03109 |
ABC1 | Domain | 99 | 178 | 5.9e-08 | 32.9 | ABC1 atypical kinase-like domain |
XP_057774584.1 |
Pfam | PF06293 |
Kdo | Family | 120 | 170 | 0.0001 | 22.5 | Lipopolysaccharide kinase (Kdo/WaaP) family |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。