当前解析结果
SmilChr07G002580| 统一新 Gene ID | SmilChr07G002580 |
|---|---|
| 名称 | SmilChr07G002580 |
| 描述 | putative L-type lectin-domain containing receptor kinase V.2 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 24694730 - 24697278 / + |
| NCBI Gene ID | LOC130993648 |
|---|---|
| GeneID | 130993648 |
| locus_tag | - |
| NCBI Name | LOC130993648 |
| 原始查询 | SmilChr07G002580 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | putative L-type lectin-domain containing receptor kinase V.2 |
| 产物 | putative L-type lectin-domain containing receptor kinase V.2 |
| Arabidopsis | AT5G18500 (AT5G18500)Protein kinase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:831968] identity=38.3; qcov=0.499; evalue=1.36e-56; confidence=medium |
| Rice | Os04g0465900- identity=63.2; qcov=0.525; evalue=6.59e-133; confidence=medium |
| GO | GO:0004672 (protein kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF07714 (PK_Tyr_Ser-Thr); PF19160 (SPARK) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130993648 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057774610.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057774610.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057774610.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057774610.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057774610.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:24695056 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C15,C21 |
Chr7:24695104 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A11,B128,B67,B7,C61 |
Chr7:24695351 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B2,B22,C32,C65,C68 |
Chr7:24695357 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B137 |
Chr7:24695359 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B100 |
Chr7:24695390 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C15,C21 |
Chr7:24695429 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B100 |
Chr7:24695867 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C39 |
Chr7:24696101 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C39 |
Chr7:24696614 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B84 |
Chr7:24697067 |
ACG |
A |
2bp_deletion | frameshift_variant | 15 | A2,A25,B105,B114,B123,B26,B35,B56,B91,B96,C10,C22,C7,C72,C86 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057774610.1PF19160
SPARK 29-167 aa
PF07714
PK_Tyr_Ser-Thr 284-478 aa
PF00069
Pkinase 286-480 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057774610.1 |
Pfam | PF19160 |
SPARK | Domain | 29 | 167 | 1.4e-09 | 39.3 | SPARK |
XP_057774610.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 284 | 478 | 6.1e-39 | 134.6 | Protein tyrosine and serine/threonine kinase |
XP_057774610.1 |
Pfam | PF00069 |
Pkinase | Domain | 286 | 480 | 8.6e-40 | 137.5 | Protein kinase domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。