当前解析结果
SmilChr07G002581| 统一新 Gene ID | SmilChr07G002581 |
|---|---|
| 名称 | SmilChr07G002581 |
| 描述 | probable xyloglucan endotransglucosylase/hydrolase protein 33 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 24698646 - 24700256 / + |
| NCBI Gene ID | LOC130993650 |
|---|---|
| GeneID | 130993650 |
| locus_tag | - |
| NCBI Name | LOC130993650 |
| 原始查询 | SmilChr07G002581 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | probable xyloglucan endotransglucosylase/hydrolase protein 33 |
| 产物 | probable xyloglucan endotransglucosylase/hydrolase protein 33 |
| Arabidopsis | AT1G10550 (XTH33)xyloglucan:xyloglucosyl transferase 33 [Source:NCBI gene (formerly Entrezgene);Acc:837596] identity=58.4; qcov=0.971; evalue=7.47e-133; confidence=high |
| Rice | Os03g0239000 (OsXTH28)- identity=45.8; qcov=0.876; evalue=3.85e-88; confidence=high |
| GO | GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds); GO:0005618 (cell wall); GO:0010411 (xyloglucan metabolic process); GO:0016762 (xyloglucan:xyloglucosyl transferase activity); GO:0042546 (cell wall biogenesis); GO:0048046 (apoplast) |
| KEGG | - |
| Pfam | PF00722 (Glyco_hydro_16); PF06955 (XET_C) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130993650 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell wall | 细胞壁 | 0.80000 | XP_057774612.1 |
| 2 | Golgi apparatus | 高尔基体 | 0.20000 | XP_057774612.1 |
| 3 | Vacuole | 液泡 | 0.20000 | XP_057774612.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057774612.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057774612.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:24699040 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B49,B60,B79,C36 |
Chr7:24699200 |
CG |
C |
1bp_deletion | frameshift_variant | 1 | B24 |
Chr7:24699200 |
CG |
C |
1bp_deletion | CDS_variant | 1 | B24 |
Chr7:24699231 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B99,D10 |
Chr7:24699243 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C53 |
Chr7:24699449 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C43 |
Chr7:24699482 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr7:24699575 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C68 |
Chr7:24699775 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A16 |
Chr7:24699862 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr7:24699916 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C40,C55 |
Chr7:24699969 |
TA |
T |
1bp_deletion | frameshift_variant | 2 | B138,B31 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057774612.1PF00722
Glyco_hydro_16 50-231 aa
PF06955
XET_C 276-311 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057774612.1 |
Pfam | PF00722 |
Glyco_hydro_16 | Domain | 50 | 231 | 3.5e-56 | 190.1 | Glycosyl hydrolases family 16 |
XP_057774612.1 |
Pfam | PF06955 |
XET_C | Family | 276 | 311 | 1.9e-14 | 53.9 | Xyloglucan endo-transglycosylase (XET) C-terminus |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。