Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr07G004703

染色体: Chr07 坐标: 59919670-59920664 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr07G004703
名称SmilChr07G004703
描述ATP synthase subunit b', chloroplastic
染色体 / SeqIDChr07 / NC_080393.1
坐标与链方向59919670 - 59920664 / +

ID 对照

NCBI Gene IDLOC130995272
GeneID130995272
locus_tag-
NCBI NameLOC130995272
原始查询SmilChr07G004703

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述ATP synthase subunit b', chloroplastic
产物ATP synthase subunit b'%2C chloroplastic
ArabidopsisAT4G32260 (PDE334)
ATPase, F0 complex, subunit B/B', bacterial/chloroplast [Source:NCBI gene (formerly Entrezgene);Acc:829359]
identity=66.2; qcov=1.02; evalue=2.82e-79; confidence=high
RiceOs03g0278900
-
identity=74.1; qcov=0.678; evalue=3.07e-61; confidence=high
GOGO:0015078 (proton transmembrane transporter activity); GO:0015986 (proton motive force-driven ATP synthesis); GO:0045263 (GO:0045263)
KEGGsmil00190 (Oxidative phosphorylation - Salvia miltiorrhiza (redroot sage)); smil00195 (Photosynthesis - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage))
PfamPF00430 (ATP-synt_B)
InterPro-
eggNOG-
NRGeneID:130995272

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Chloroplast 叶绿体 1.00000 XP_057776486.1
2 Chloroplast thylakoid 类囊体 1.00000 XP_057776486.1
3 Chloroplast thylakoid membrane 类囊体膜 1.00000 XP_057776486.1
4 Chloroplast membrane 叶绿体膜 0.20000 XP_057776486.1
5 Nucleus 细胞核 0.00000 XP_057776486.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr7:59920048 C T EMS_canonical_SNV CDS_variant 1 B85
Chr7:59920090 C T EMS_canonical_SNV CDS_variant 2 C20,C56
Chr7:59920119 C T EMS_canonical_SNV CDS_variant 3 C70,C73,D9
Chr7:59920245 C T EMS_canonical_SNV CDS_variant 1 C18
Chr7:59920281 C T EMS_canonical_SNV CDS_variant 1 B115
Chr7:59920360 C T EMS_canonical_SNV CDS_variant 1 B21
Chr7:59920503 G A EMS_canonical_SNV CDS_variant 1 C64

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057776486.1
211 aa
N
1
106
211
ATP-synt_B
C
PF00430 ATP-synt_B 79-208 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057776486.1 Pfam PF00430 ATP-synt_B Coiled-coil 79 208 1.7e-14 54.8 ATP synthase B/B' CF(0)

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057920503.1
ATAAATCATTAAAAAGATAATATTCCTAAGTGCACGTGAGTAGCACGCTCTTCGAATCCAATATAAATTCATTTTTTATTCAATTTCGAAATCGAATCACAACCTCTCATCAATCTGTGTGGCAGAGAAAGAGATAGCCTTTTTTCCCCCAAGATTTTGTTGCCCTCTTCATCCCCATTTTCACCCCAAAAAAAGAAAAAAGAAAAAAAGTAAATCAAAGAATCTCGTAGAAGGTAAAGCAGAGCAGCCATGGCGAACAT...

CDS

1 records

下载 CDS FASTA
LOC130995272
ATGGCGAACATGATCATGGCCTCTTCCCGAGCCCTAATCACCGCTTCCATCTCCACCCCCAAACTCAAACCCCAACAATCCCAACCCCAATCCCTCCCCAAAATCTCGCTGCCGAACAAAGCCCAGCACCTCCTCTCCGCCGCCGCCGCCGCCGCAACCCTAACCCTAACCCACGCGCCGCCGTCTCTGGCGGCGGACATCGAGAAGGCGGCGCTGTTCGACTTCAACCTGACGCTCCCGATCATCGCGGCGGAGTTCCT...

Protein

1 records

下载 Protein FASTA
XP_057776486.1
MANMIMASSRALITASISTPKLKPQQSQPQSLPKISLPNKAQHLLSAAAAAATLTLTHAPPSLAADIEKAALFDFNLTLPIIAAEFLFLMFAMDKLYYSPLGKFMDERDAAIREKLSSVKDTSAEVKQLEAQGNAMMKAARAEISAALNKMKKETQVEVEAKLAEGRKKIEAELQEALASLEKQKEETIAALDSQIAALSDEIVKKVLPVS

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器