当前解析结果
SmilChr08G000107| 统一新 Gene ID | SmilChr08G000107 |
|---|---|
| 名称 | SmilChr08G000107 |
| 描述 | 2-alkenal reductase (NADP(+)-dependent)-like |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 662484 - 678414 / + |
| NCBI Gene ID | LOC130999729 |
|---|---|
| GeneID | 130999729 |
| locus_tag | - |
| NCBI Name | LOC130999729 |
| 原始查询 | SmilChr08G000107 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | 2-alkenal reductase (NADP(+)-dependent)-like |
| 产物 | 2-alkenal reductase (NADP(+)-dependent)-like |
| Arabidopsis | AT5G16990 (AT5G16990)Zinc-binding dehydrogenase family protein [Source:NCBI gene (formerly Entrezgene);Acc:831562] identity=71.8; qcov=1; evalue=8.76e-178; confidence=high |
| Rice | Os04g0497000 (OsNADPH1)- identity=65.4; qcov=1; evalue=5.98e-159; confidence=high |
| GO | GO:0032440 (2-alkenal reductase [NAD(P)H] activity) |
| KEGG | - |
| Pfam | PF00107 (ADH_zinc_N); PF13602 (ADH_zinc_N_2); PF16884 (ADH_N_2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130999729 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 0.80000 | XP_057781331.1 |
| 2 | Cytosol | 细胞质基质 | 0.80000 | XP_057781331.1 |
| 3 | Peroxisome | 过氧化物酶体 | 0.20000 | XP_057781331.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057781331.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057781331.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:662654 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B106,C21 |
Chr8:662673 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A7,C33 |
Chr8:662685 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B106,B131,B16 |
Chr8:663920 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B114,B23,C47 |
Chr8:663923 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A5,B114,C65 |
Chr8:663940 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A2,B1,B101 |
Chr8:664012 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A5,B114,B77,C65,D6 |
Chr8:664258 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B114 |
Chr8:664274 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B7,C55 |
Chr8:664281 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B61,C4,C72 |
Chr8:664297 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A5,B114,C65 |
Chr8:664381 |
TG |
T |
1bp_deletion | frameshift_variant | 3 | B140,B40,C20 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057781331.1PF16884
ADH_N_2 8-118 aa
PF00107
ADH_zinc_N 163-295 aa
PF13602
ADH_zinc_N_2 197-336 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057781331.1 |
Pfam | PF16884 |
ADH_N_2 | Family | 8 | 118 | 7.6e-22 | 78.0 | N-terminal domain of oxidoreductase |
XP_057781331.1 |
Pfam | PF00107 |
ADH_zinc_N | Domain | 163 | 295 | 2.8e-25 | 89.5 | Zinc-binding dehydrogenase |
XP_057781331.1 |
Pfam | PF13602 |
ADH_zinc_N_2 | Domain | 197 | 336 | 1.4e-07 | 33.2 | Zinc-binding dehydrogenase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。