当前解析结果
SmilChr08G000112| 统一新 Gene ID | SmilChr08G000112 |
|---|---|
| 名称 | SmilChr08G000112 |
| 描述 | 2-alkenal reductase (NADP(+)-dependent)-like |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 706266 - 709820 / + |
| NCBI Gene ID | LOC130999732 |
|---|---|
| GeneID | 130999732 |
| locus_tag | - |
| NCBI Name | LOC130999732 |
| 原始查询 | SmilChr08G000112 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | 2-alkenal reductase (NADP(+)-dependent)-like |
| 产物 | 2-alkenal reductase (NADP(+)-dependent)-like |
| Arabidopsis | AT5G16990 (AT5G16990)Zinc-binding dehydrogenase family protein [Source:NCBI gene (formerly Entrezgene);Acc:831562] identity=69.8; qcov=0.991; evalue=6.33e-174; confidence=high |
| Rice | Os04g0497000 (OsNADPH1)- identity=66.6; qcov=0.991; evalue=5.11e-166; confidence=high |
| GO | GO:0032440 (2-alkenal reductase [NAD(P)H] activity) |
| KEGG | - |
| Pfam | PF00107 (ADH_zinc_N); PF13602 (ADH_zinc_N_2); PF16884 (ADH_N_2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130999732 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 1.00000 | XP_057781335.1 |
| 2 | Cytoplasm | 细胞质 | 0.80000 | XP_057781335.1 |
| 3 | Peroxisome | 过氧化物酶体 | 0.20000 | XP_057781335.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057781335.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057781335.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:706549 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B111,C6 |
Chr8:706607 |
T |
TA |
1bp_insertion | frameshift_variant | 3 | B122,B51,D5 |
Chr8:706607 |
T |
TA |
1bp_insertion | CDS_variant | 3 | B122,B51,D5 |
Chr8:707252 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B130,B91,C34,C64,C66 |
Chr8:707261 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C86 |
Chr8:707279 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B55,C51 |
Chr8:707312 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B109,B136 |
Chr8:707389 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A8,B83 |
Chr8:707939 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A9,B45,C52,D7 |
Chr8:707948 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B11,B119,B31,C47 |
Chr8:707960 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B38 |
Chr8:707972 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B60 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057781335.1PF16884
ADH_N_2 9-113 aa
PF00107
ADH_zinc_N 166-299 aa
PF13602
ADH_zinc_N_2 200-339 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057781335.1 |
Pfam | PF16884 |
ADH_N_2 | Family | 9 | 113 | 1.2e-24 | 87.0 | N-terminal domain of oxidoreductase |
XP_057781335.1 |
Pfam | PF00107 |
ADH_zinc_N | Domain | 166 | 299 | 7.2e-25 | 88.1 | Zinc-binding dehydrogenase |
XP_057781335.1 |
Pfam | PF13602 |
ADH_zinc_N_2 | Domain | 200 | 339 | 5.7e-09 | 37.7 | Zinc-binding dehydrogenase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。