Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G000143`

染色体: Chr08 坐标: 921612-958452 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G000143`
名称	SmilChr08G000143
描述	putative disease resistance RPP13-like protein 1
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	921612 - 958452 / `+`

ID 对照

NCBI Gene ID	`LOC130999767`
GeneID	`130999767`
locus_tag	`-`
NCBI Name	`LOC130999767`
原始查询	`SmilChr08G000143`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	putative disease resistance RPP13-like protein 1
产物	putative disease resistance RPP13-like protein 1
Arabidopsis	`AT3G14470` (AT3G14470) NB-ARC domain-containing disease resistance protein [Source:NCBI gene (formerly Entrezgene);Acc:820670] identity=32.5; qcov=0.996; evalue=2.09e-123; confidence=low
Rice	`Os05g0492200` (YR1) - identity=32.2; qcov=1.03; evalue=1.04e-125; confidence=low
GO	GO:0043531 (ADP binding); GO:0098542 (defense response to other organism)
KEGG	-
Pfam	PF00931 (NB-ARC); PF18052 (Rx_N); PF23247 (LRR_RPS2); PF23559 (WHD_DRP); PF23598 (LRR_14); PF25019 (LRR_R13L1-DRL21)
InterPro	-
eggNOG	-
NR	GeneID:130999767

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057781376.1`
2	Cytosol	细胞质基质	0.20000	`XP_057781376.1`
3	Nucleus	细胞核	0.00000	`XP_057781376.1`
4	Chromosome	染色体	0.00000	`XP_057781376.1`
5	Centromere	着丝粒	0.00000	`XP_057781376.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:932905`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C40
`Chr8:933006`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B136,B92,B99,C30,C62
`Chr8:933061`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B51,B77,C10,C37,C75
`Chr8:933064`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A19,C18
`Chr8:933080`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A20,B128,B14,B69,C81
`Chr8:933082`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B5,C29
`Chr8:933134`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C78
`Chr8:933136`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B51,C10,C82,D1
`Chr8:933162`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B115
`Chr8:933205`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B55
`Chr8:933304`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B20,C73,D11,D9
`Chr8:933366`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B140,B96,C17,C26

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057781376.1

982 aa

491

982

Rx_N

NB-ARC

WHD_DRP

LRR_14

LRR_R13L1-DRL21

LRR_RPS2

PF18052 Rx_N 9-94 aa PF00931 NB-ARC 179-351 aa PF23559 WHD_DRP 432-503 aa PF23598 LRR_14 544-839 aa PF25019 LRR_R13L1-DRL21 672-806 aa PF23247 LRR_RPS2 773-893 aa

XP_057781378.1

982 aa

491

982

Rx_N

NB-ARC

WHD_DRP

LRR_14

LRR_R13L1-DRL21

LRR_RPS2

PF18052 Rx_N 9-94 aa PF00931 NB-ARC 179-351 aa PF23559 WHD_DRP 432-503 aa PF23598 LRR_14 544-839 aa PF25019 LRR_R13L1-DRL21 672-806 aa PF23247 LRR_RPS2 773-893 aa

XP_057781379.1

982 aa

491

982

Rx_N

NB-ARC

WHD_DRP

LRR_14

LRR_R13L1-DRL21

LRR_RPS2

PF18052 Rx_N 9-94 aa PF00931 NB-ARC 179-351 aa PF23559 WHD_DRP 432-503 aa PF23598 LRR_14 544-839 aa PF25019 LRR_R13L1-DRL21 672-806 aa PF23247 LRR_RPS2 773-893 aa

XP_057781380.1

982 aa

491

982

Rx_N

NB-ARC

WHD_DRP

LRR_14

LRR_R13L1-DRL21

LRR_RPS2

PF18052 Rx_N 9-94 aa PF00931 NB-ARC 179-351 aa PF23559 WHD_DRP 432-503 aa PF23598 LRR_14 544-839 aa PF25019 LRR_R13L1-DRL21 672-806 aa PF23247 LRR_RPS2 773-893 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057781376.1`	Pfam	`PF18052`	Rx_N	Domain	9	94	1.3e-20	74.0	Rx N-terminal domain
`XP_057781376.1`	Pfam	`PF00931`	NB-ARC	Domain	179	351	6.6e-35	120.9	NB-ARC domain
`XP_057781376.1`	Pfam	`PF23559`	WHD_DRP	Domain	432	503	1.6e-25	89.7	Disease resistance protein Winged helix domain
`XP_057781376.1`	Pfam	`PF23598`	LRR_14	Repeat	544	839	3.3e-36	125.5	Leucine-rich repeat region
`XP_057781376.1`	Pfam	`PF25019`	LRR_R13L1-DRL21	Repeat	672	806	5e-33	114.4	R13L1/DRL21 LRRs
`XP_057781376.1`	Pfam	`PF23247`	LRR_RPS2	Repeat	773	893	4.4e-09	37.2	Plant disease resistance protein RPS2-like, leucine-rich repeats
`XP_057781378.1`	Pfam	`PF18052`	Rx_N	Domain	9	94	1.3e-20	74.0	Rx N-terminal domain
`XP_057781378.1`	Pfam	`PF00931`	NB-ARC	Domain	179	351	6.6e-35	120.9	NB-ARC domain
`XP_057781378.1`	Pfam	`PF23559`	WHD_DRP	Domain	432	503	1.6e-25	89.7	Disease resistance protein Winged helix domain
`XP_057781378.1`	Pfam	`PF23598`	LRR_14	Repeat	544	839	3.3e-36	125.5	Leucine-rich repeat region
`XP_057781378.1`	Pfam	`PF25019`	LRR_R13L1-DRL21	Repeat	672	806	5e-33	114.4	R13L1/DRL21 LRRs
`XP_057781378.1`	Pfam	`PF23247`	LRR_RPS2	Repeat	773	893	4.4e-09	37.2	Plant disease resistance protein RPS2-like, leucine-rich repeats
`XP_057781379.1`	Pfam	`PF18052`	Rx_N	Domain	9	94	1.3e-20	74.0	Rx N-terminal domain
`XP_057781379.1`	Pfam	`PF00931`	NB-ARC	Domain	179	351	6.6e-35	120.9	NB-ARC domain
`XP_057781379.1`	Pfam	`PF23559`	WHD_DRP	Domain	432	503	1.6e-25	89.7	Disease resistance protein Winged helix domain
`XP_057781379.1`	Pfam	`PF23598`	LRR_14	Repeat	544	839	3.3e-36	125.5	Leucine-rich repeat region
`XP_057781379.1`	Pfam	`PF25019`	LRR_R13L1-DRL21	Repeat	672	806	5e-33	114.4	R13L1/DRL21 LRRs
`XP_057781379.1`	Pfam	`PF23247`	LRR_RPS2	Repeat	773	893	4.4e-09	37.2	Plant disease resistance protein RPS2-like, leucine-rich repeats
`XP_057781380.1`	Pfam	`PF18052`	Rx_N	Domain	9	94	1.3e-20	74.0	Rx N-terminal domain
`XP_057781380.1`	Pfam	`PF00931`	NB-ARC	Domain	179	351	6.6e-35	120.9	NB-ARC domain
`XP_057781380.1`	Pfam	`PF23559`	WHD_DRP	Domain	432	503	1.6e-25	89.7	Disease resistance protein Winged helix domain
`XP_057781380.1`	Pfam	`PF23598`	LRR_14	Repeat	544	839	3.3e-36	125.5	Leucine-rich repeat region
`XP_057781380.1`	Pfam	`PF25019`	LRR_R13L1-DRL21	Repeat	672	806	5e-33	114.4	R13L1/DRL21 LRRs
`XP_057781380.1`	Pfam	`PF23247`	LRR_RPS2	Repeat	773	893	4.4e-09	37.2	Plant disease resistance protein RPS2-like, leucine-rich repeats

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057925397.1
CAGAAATAATGAGGGTGAATTACTGTGTGTGCCAGCAGCTCAACACACAATAAAATAAGTAGTGAAAGCGAGTTGAATATTTGATAAAGTCAAAGTTTGAAATATAAAAAATGAAAAAGGAAAACCATATCTTGCATCACTCATCCAATTCTGTTCCTTAATCCTCTCTCTCTCACTCAATTTCTCTGTTTCTCTCTCTAAGTTATCAGCTACCACAAAGCAAGGAGGCAGCAGTCCTTAAAGCGCAGTAGGGAAGCTAG...

XM_057925395.1
CAGAAATAATGAGGGTGAATTACTGTGTGTGCCAGCAGCTCAACACACAATAAAATAAGTAGTGAAAGCGAGTTGAATATTTGATAAAGTCAAAGTTTGAAATATAAAAAATGAAAAAGGAAAACCATATCTTGCATCACTCATCCAATTCTGTTCCTTAATCCTCTCTCTCTCACTCAATTTCTCTGTTTCTCTCTCTAAGTTATCAGCTACCACAAAGCAAGGAGGCAGCAGTCCTTAAAGCGCAGTAGGGAAGTTAT...

CDS

4 records

下载 CDS FASTA

LOC130999767
ATGGAAGCAGCAGCTGCTACCGCCGTCCTTAAAGTTCTAGTTCAAAAACTCATCGACCTCCCCATGAAAGAGATCTCTCAAATCCGAGGTTTCCGCAAAAATGCAGAAAAGCTAGCTGGAAGTCTCGACATGATCCAGAAATTCTTGCACAATGCTGAGATGCGTGCCATCACCAGCGATGCTGCTGTCAAGTGCTGGTTGAAGAAGCTTGAAGACGTGGCGTTCGATGCTGACAATGTTTTGGATGATATCAACTATCA...

Protein

4 records

下载 Protein FASTA

XP_057781376.1
MEAAAATAVLKVLVQKLIDLPMKEISQIRGFRKNAEKLAGSLDMIQKFLHNAEMRAITSDAAVKCWLKKLEDVAFDADNVLDDINYHILSKQIKATKPMKAKILSGFSSSVNSIARPRNMAVRIKKINKNLESIKKEATDLGLVVRLAIANEPTLVDASLETDSYTRDPIFIGRDDAVSEIVRTLINGIKTDERAVSILPIVGMGGLGKTTLTRKVFNCLKDESRFGSHLWVHVSPNFDAITLFKKILNNLTSCQVEIAS...

XP_057781378.1
MEAAAATAVLKVLVQKLIDLPMKEISQIRGFRKNAEKLAGSLDMIQKFLHNAEMRAITSDAAVKCWLKKLEDVAFDADNVLDDINYHILSKQIKATKPMKAKILSGFSSSVNSIARPRNMAVRIKKINKNLESIKKEATDLGLVVRLAIANEPTLVDASLETDSYTRDPIFIGRDDAVSEIVRTLINGIKTDERAVSILPIVGMGGLGKTTLTRKVFNCLKDESRFGSHLWVHVSPNFDAITLFKKILNNLTSCQVEIAS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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