当前解析结果
SmilChr08G000315| 统一新 Gene ID | SmilChr08G000315 |
|---|---|
| 名称 | SmilChr08G000315 |
| 描述 | probable protein phosphatase 2C 55 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 2209657 - 2210442 / + |
| NCBI Gene ID | LOC130997054 |
|---|---|
| GeneID | 130997054 |
| locus_tag | - |
| NCBI Name | LOC130997054 |
| 原始查询 | SmilChr08G000315 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | probable protein phosphatase 2C 55 |
| 产物 | probable protein phosphatase 2C 55 |
| Arabidopsis | AT4G16580 (AT4G16580)Protein phosphatase 2C family protein [Source:NCBI gene (formerly Entrezgene);Acc:827359] identity=45.8; qcov=0.92; evalue=7.97e-63; confidence=high |
| Rice | Os03g0809300 (OsPP57)- identity=46.7; qcov=0.927; evalue=3.64e-62; confidence=high |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130997054 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 1.00000 | XP_057778316.1 |
| 2 | Nucleus | 细胞核 | 0.60000 | XP_057778316.1 |
| 3 | Cytoplasm | 细胞质 | 0.40000 | XP_057778316.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057778316.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057778316.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:2209671 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B13,B140 |
Chr8:2209695 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B5 |
Chr8:2209734 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B86,C13 |
Chr8:2209737 |
A |
ATG |
2bp_insertion | stop_gained,frameshift_variant | 1 | B122 |
Chr8:2209737 |
A |
ATG |
2bp_insertion | CDS_variant | 1 | B122 |
Chr8:2209747 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A14 |
Chr8:2209764 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A22,C2 |
Chr8:2209815 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B104,B25 |
Chr8:2209821 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B123 |
Chr8:2209832 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B1,B7,B99,C59,C80 |
Chr8:2209835 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B140 |
Chr8:2209857 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C82 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。