当前解析结果
SmilChr08G000865| 统一新 Gene ID | SmilChr08G000865 |
|---|---|
| 名称 | SmilChr08G000865 |
| 描述 | translocase of chloroplast 159, chloroplastic |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 6431465 - 6435849 / + |
| NCBI Gene ID | LOC131000452 |
|---|---|
| GeneID | 131000452 |
| locus_tag | - |
| NCBI Name | LOC131000452 |
| 原始查询 | SmilChr08G000865 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | translocase of chloroplast 159, chloroplastic |
| 产物 | translocase of chloroplast 159%2C chloroplastic |
| Arabidopsis | AT4G02510 (TOC159)translocon at the outer envelope membrane of chloroplasts 159 [Source:NCBI gene (formerly Entrezgene);Acc:827934] identity=68.1; qcov=0.641; evalue=0; confidence=high |
| Rice | Os05g0151400- identity=61.9; qcov=0.64; evalue=0; confidence=high |
| GO | GO:0003924 (GTPase activity); GO:0005525 (GTP binding); GO:0009707 (chloroplast outer membrane); GO:0045036 (protein targeting to chloroplast) |
| KEGG | - |
| Pfam | PF01926 (MMR_HSR1); PF04548 (AIG1); PF11886 (TOC159_MAD) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131000452 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Endoplasmic reticulum | 内质网 | 0.40000 | XP_057782351.1 |
| 2 | Chloroplast | 叶绿体 | 0.40000 | XP_057782351.1 |
| 3 | Chloroplast membrane | 叶绿体膜 | 0.20000 | XP_057782351.1 |
| 4 | Peroxisome | 过氧化物酶体 | 0.20000 | XP_057782351.1 |
| 5 | Nucleus | 细胞核 | 0.00000 | XP_057782351.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:6431724 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr8:6431738 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B14,D10 |
Chr8:6431884 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C15 |
Chr8:6432051 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B118 |
Chr8:6432056 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A1,B42,B6,C37,C5 |
Chr8:6432082 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr8:6432191 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C14 |
Chr8:6432312 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C14 |
Chr8:6432384 |
TG |
T |
1bp_deletion | frameshift_variant | 1 | B101 |
Chr8:6432384 |
TG |
T |
1bp_deletion | CDS_variant | 1 | B101 |
Chr8:6432402 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A22,B34,B82,D7 |
Chr8:6432480 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B131,B2,B82,C60,C74 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057782351.1PF04548
AIG1 711-844 aa
PF01926
MMR_HSR1 712-801 aa
PF11886
TOC159_MAD 1074-1338 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057782351.1 |
Pfam | PF04548 |
AIG1 | Domain | 711 | 844 | 2e-18 | 67.2 | AIG1 family |
XP_057782351.1 |
Pfam | PF01926 |
MMR_HSR1 | Family | 712 | 801 | 6.6e-10 | 39.8 | 50S ribosome-binding GTPase |
XP_057782351.1 |
Pfam | PF11886 |
TOC159_MAD | Family | 1074 | 1338 | 1.5e-117 | 392.0 | Translocase of chloroplast 159/132, membrane anchor domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。