Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G001381`

染色体: Chr08 坐标: 11005805-11015071 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G001381`
名称	SmilChr08G001381
描述	uncharacterized SmilChr08G001381
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	11005805 - 11015071 / `-`

ID 对照

NCBI Gene ID	`LOC131000865`
GeneID	`131000865`
locus_tag	`-`
NCBI Name	`LOC131000865`
原始查询	`SmilChr08G001381`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	hit=Os08g0315200; species=rice; confidence=low
产物	hit=Os08g0315200; species=rice; confidence=low
Arabidopsis	`-` -
Rice	`Os08g0315200` - identity=34.5; qcov=0.458; evalue=1.97e-27; confidence=low
GO	GO:0003676 (nucleic acid binding); GO:0008270 (zinc ion binding)
KEGG	-
Pfam	PF00098 (zf-CCHC); PF03732 (PEG10_N-capsid); PF19259 (Ty3_capsid)
InterPro	-
eggNOG	-
NR	GeneID:131000865

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	0.80000	`XP_057782975.1`
2	Nucleus	细胞核	0.60000	`XP_057782975.1`
3	Cytoplasmic granule	细胞质颗粒	0.20000	`XP_057782975.1`
4	Cytoplasmic ribonucleoprotein granule	Cytoplasmic ribonucleoprotein granule	0.20000	`XP_057782975.1`
5	Cytosol	细胞质基质	0.20000	`XP_057782975.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:11009623`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C57
`Chr8:11009627`	`G`	`A`	EMS_canonical_SNV	stop_gained	3	B8,C1,C57
`Chr8:11009627`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B8,C1,C57
`Chr8:11009633`	`G`	`A`	EMS_canonical_SNV	stop_gained	4	B105,B132,B43,C70
`Chr8:11009633`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B105,B132,B43,C70
`Chr8:11009638`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B48,C49
`Chr8:11009650`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B44,B73,C11,C56,C73
`Chr8:11009651`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B140,C23
`Chr8:11009663`	`AG`	`A`	1bp_deletion	frameshift_variant	6	B55,B61,B95,C21,C50,C81
`Chr8:11009666`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B1,C32,C58,D10
`Chr8:11009667`	`G`	`GA`	1bp_insertion	frameshift_variant	1	B43
`Chr8:11009667`	`G`	`GA`	1bp_insertion	CDS_variant	1	B43

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057782975.1

367 aa

184

367

Ty3_capsid

PEG10_N-capsid

zf-CCHC

PF19259 Ty3_capsid 62-224 aa PF03732 PEG10_N-capsid 63-141 aa PF00098 zf-CCHC 322-338 aa

XP_057782976.1

367 aa

184

367

Ty3_capsid

PEG10_N-capsid

zf-CCHC

PF19259 Ty3_capsid 62-224 aa PF03732 PEG10_N-capsid 63-141 aa PF00098 zf-CCHC 322-338 aa

XP_057782977.1

367 aa

184

367

Ty3_capsid

PEG10_N-capsid

zf-CCHC

PF19259 Ty3_capsid 62-224 aa PF03732 PEG10_N-capsid 63-141 aa PF00098 zf-CCHC 322-338 aa

XP_057782978.1

367 aa

184

367

Ty3_capsid

PEG10_N-capsid

zf-CCHC

PF19259 Ty3_capsid 62-224 aa PF03732 PEG10_N-capsid 63-141 aa PF00098 zf-CCHC 322-338 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057782975.1`	Pfam	`PF19259`	Ty3_capsid	Domain	62	224	1.3e-08	35.2	Ty3 transposon capsid-like protein
`XP_057782975.1`	Pfam	`PF03732`	PEG10_N-capsid	Domain	63	141	5.2e-14	53.1	Retrotransposon-derived protein PEG10, N-terminal capsid-like domain
`XP_057782975.1`	Pfam	`PF00098`	zf-CCHC	Domain	322	338	1e-05	26.1	Zinc knuckle
`XP_057782976.1`	Pfam	`PF19259`	Ty3_capsid	Domain	62	224	1.3e-08	35.2	Ty3 transposon capsid-like protein
`XP_057782976.1`	Pfam	`PF03732`	PEG10_N-capsid	Domain	63	141	5.2e-14	53.1	Retrotransposon-derived protein PEG10, N-terminal capsid-like domain
`XP_057782976.1`	Pfam	`PF00098`	zf-CCHC	Domain	322	338	1e-05	26.1	Zinc knuckle
`XP_057782977.1`	Pfam	`PF19259`	Ty3_capsid	Domain	62	224	1.3e-08	35.2	Ty3 transposon capsid-like protein
`XP_057782977.1`	Pfam	`PF03732`	PEG10_N-capsid	Domain	63	141	5.2e-14	53.1	Retrotransposon-derived protein PEG10, N-terminal capsid-like domain
`XP_057782977.1`	Pfam	`PF00098`	zf-CCHC	Domain	322	338	1e-05	26.1	Zinc knuckle
`XP_057782978.1`	Pfam	`PF19259`	Ty3_capsid	Domain	62	224	1.3e-08	35.2	Ty3 transposon capsid-like protein
`XP_057782978.1`	Pfam	`PF03732`	PEG10_N-capsid	Domain	63	141	5.2e-14	53.1	Retrotransposon-derived protein PEG10, N-terminal capsid-like domain
`XP_057782978.1`	Pfam	`PF00098`	zf-CCHC	Domain	322	338	1e-05	26.1	Zinc knuckle

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

12 records

下载 cDNA FASTA

XR_009093807.1
ATGAAAAAAAAAAAAAAAAAAAAAAACGCGACGAGGATTATTGAGCAATCAATAATTATTATTTCCAAGTTATAACTGACTTAGCAAAGTCATGTTATTTATTAATCGAGAAACAGAAGCAGTTATATTTTATTAGTGCTACTAGAAGTCGAGAAATTATTCCGACTGCAACGCAAATTCAATCTACGGATTTAATCTAGATTCATATTACTGTATTAGCATCACCAAGGCATGAGGATATAATTCATTTATTCATCAAT...

XR_009093806.1
ATGAAAAAAAAAAAAAAAAAAAAAAACGCGACGAGGATTATTGAGCAATCAATAATTATTATTTCCAAGTTATAACTGACTTAGCAAAGTCATGTTATTTATTAATCGAGAAACAGAAGCAGTTATATTTTATTAGTGCTACTAGAAGTCGAGAAATTATTCCGACTGCAACGCAAATTCAATCTACGGATTTAATCTAGATTCATATTACTGTATTAGCATCACCAAGGCATGAGGATATAATTCATTTATTCATCAAT...

CDS

4 records

下载 CDS FASTA

LOC131000865
ATGCTAGAGTGTACTAATTGGCACATATTTGCTACCAGAATGCCGCCTAGGAGAGGACGCCCTGCGAGAAACAATAACAATCGCAGAAACCGTAACGCTGTACCCGAAGAACCACAAGATGCTCGAGGACATAACCCATCCCCTCCGCCTCCGACTAGGAGAGTCGAAGAACTCTTTTTAAGGCAAAATCCACCTACGTTTGACGGAACGAGTGAACCGGCTGAAGCTGAGATTTGGGTGCGTGCAATGGAACGTATTTT...

Protein

4 records

下载 Protein FASTA

XP_057782975.1
MLECTNWHIFATRMPPRRGRPARNNNNRRNRNAVPEEPQDARGHNPSPPPPTRRVEELFLRQNPPTFDGTSEPAEAEIWVRAMERIFNFLRCTDEERLSCVSFQLTGSADFWWEARRKILTPEQWASYTWEDFKTGLYDKYIPKSYRKKKEAEFYELKQGNKSVVEYDKEFCNMSRFAPQQVDTEEKMAEKFCEGLRYEIKMVLASHGGLSYTESLNRALDIEAAMPSDKSAPPLISTPNDPPGASHTLKGKHKWDNNED...

XP_057782976.1
MLECTNWHIFATRMPPRRGRPARNNNNRRNRNAVPEEPQDARGHNPSPPPPTRRVEELFLRQNPPTFDGTSEPAEAEIWVRAMERIFNFLRCTDEERLSCVSFQLTGSADFWWEARRKILTPEQWASYTWEDFKTGLYDKYIPKSYRKKKEAEFYELKQGNKSVVEYDKEFCNMSRFAPQQVDTEEKMAEKFCEGLRYEIKMVLASHGGLSYTESLNRALDIEAAMPSDKSAPPLISTPNDPPGASHTLKGKHKWDNNED...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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