当前解析结果
SmilChr08G001495| 统一新 Gene ID | SmilChr08G001495 |
|---|---|
| 名称 | SmilChr08G001495 |
| 描述 | subtilisin-like protease SBT1.6 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 12119510 - 12122122 / + |
| NCBI Gene ID | LOC131001044 |
|---|---|
| GeneID | 131001044 |
| locus_tag | - |
| NCBI Name | LOC131001044 |
| 原始查询 | SmilChr08G001495 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | subtilisin-like protease SBT1.6 |
| 产物 | subtilisin-like protease SBT1.6 |
| Arabidopsis | AT4G34980 (SLP2)subtilisin-like serine protease 2 [Source:NCBI gene (formerly Entrezgene);Acc:829650] identity=72.5; qcov=1; evalue=0; confidence=high |
| Rice | Os03g0242900 (OsSub28)- identity=64.8; qcov=0.976; evalue=0; confidence=high |
| GO | GO:0004252 (serine-type endopeptidase activity); GO:0006508 (proteolysis) |
| KEGG | - |
| Pfam | PF00082 (Peptidase_S8); PF02225 (PA); PF05922 (Inhibitor_I9); PF17766 (fn3_6) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131001044 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Secreted | 分泌到胞外 | 0.80000 | XP_057783199.1 |
| 2 | Cell wall | 细胞壁 | 0.20000 | XP_057783199.1 |
| 3 | Vacuole | 液泡 | 0.20000 | XP_057783199.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057783199.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057783199.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:12119759 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr8:12120124 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B135,C58 |
Chr8:12120127 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B135,C58 |
Chr8:12120208 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B104,C34 |
Chr8:12120265 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B112,B88,C22,C59 |
Chr8:12120525 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A23,C51 |
Chr8:12120612 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C4 |
Chr8:12120685 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B22 |
Chr8:12120703 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A23 |
Chr8:12120792 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D5 |
Chr8:12120929 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B4,C36,C38,C55,C65 |
Chr8:12121018 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057783199.1PF05922
Inhibitor_I9 27-99 aa
PF00082
Peptidase_S8 122-589 aa
PF02225
PA 373-455 aa
PF17766
fn3_6 657-759 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057783199.1 |
Pfam | PF05922 |
Inhibitor_I9 | Domain | 27 | 99 | 2.6e-14 | 54.4 | Peptidase inhibitor I9 |
XP_057783199.1 |
Pfam | PF00082 |
Peptidase_S8 | Domain | 122 | 589 | 1e-46 | 160.3 | Subtilase family |
XP_057783199.1 |
Pfam | PF02225 |
PA | Domain | 373 | 455 | 5e-12 | 46.5 | PA domain |
XP_057783199.1 |
Pfam | PF17766 |
fn3_6 | Domain | 657 | 759 | 1.6e-27 | 96.3 | Fibronectin type-III domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。