Gene Card

Search by standard ID, NCBI Gene ID, GeneID, locus tag, transcript ID, protein ID, or a manually reviewed literature gene name. The page resolves the query to a Red Sage gene and integrates coordinates, sequences, annotations, subcellular localization, EMS variants, and downloads.

Resolved gene

`SmilChr08G001896`

Chromosome: Chr08 Coordinates: 16464015-16465461 Strand: + Biotype: protein_coding

Basic Information

Standard Gene ID	`SmilChr08G001896`
Name	SmilChr08G001896
Description	transcription factor MYB93-like
Chromosome / SeqID	Chr08 / NC_080394.1
Coordinates and Strand	16464015 - 16465461 / `+`

ID Mapping

NCBI Gene ID	`LOC131001433`
GeneID	`131001433`
locus_tag	`-`
NCBI Name	`LOC131001433`
Original query	`SmilChr08G001896`

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Functional Annotation

Source	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
Description	transcription factor MYB93-like
Product	transcription factor MYB93-like
Arabidopsis	`AT1G34670` (MYB93) myb domain protein 93 [Source:NCBI gene (formerly Entrezgene);Acc:840371] identity=75.7; qcov=0.658; evalue=2.41e-96; confidence=high
Rice	`Os06g0221000` - identity=72.6; qcov=0.651; evalue=5.28e-93; confidence=high
GO	-
KEGG	-
Pfam	PF00249 (Myb_DNA-binding); PF13921 (Myb_DNA-bind_6)
InterPro	-
eggNOG	-
NR	GeneID:131001433

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Subcellular Localization Top 5

Rank	Location	Chinese	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057783815.1`
2	Chromosome	染色体	0.00000	`XP_057783815.1`
3	Centromere	着丝粒	0.00000	`XP_057783815.1`
4	Chromatin	染色质	0.00000	`XP_057783815.1`
5	Telomere	端粒	0.00000	`XP_057783815.1`

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EMS Mutant Variants

The table shows the first 12 candidate EMS variants for this gene. Open the EMS module for full filtering and downloads.

Position	REF	ALT	Type	Effect	Carriers	Samples
`Chr8:16464894`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A20,A25,B12,B75,C70
`Chr8:16464962`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B8
`Chr8:16464984`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B112,B82,C11,C48,C69
`Chr8:16464989`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A2,B40

Open EMS variants

Predicted Protein Domains

Domain results are from the Pfam-A HMM database and HMMER hmmscan; positions are amino-acid coordinates on the corresponding protein sequence.

XP_057783815.1

275 aa

138

275

Myb_DNA-binding

Myb_DNA-bind_6

Myb_DNA-binding

Myb_DNA-bind_6

PF00249 Myb_DNA-binding 15-62 aa PF13921 Myb_DNA-bind_6 18-78 aa PF00249 Myb_DNA-binding 68-113 aa PF13921 Myb_DNA-bind_6 71-117 aa

Protein ID	Source	Domain ID	Domain name	Type	Start aa	End aa	E-value	Score	Description
`XP_057783815.1`	Pfam	`PF00249`	Myb_DNA-binding	Domain	15	62	9e-40	135.3	Myb-like DNA-binding domain
`XP_057783815.1`	Pfam	`PF13921`	Myb_DNA-bind_6	Domain	18	78	1.4e-22	80.3	Myb-like DNA-binding domain
`XP_057783815.1`	Pfam	`PF00249`	Myb_DNA-binding	Domain	68	113	9e-40	135.3	Myb-like DNA-binding domain
`XP_057783815.1`	Pfam	`PF13921`	Myb_DNA-bind_6	Domain	71	117	1.4e-22	80.3	Myb-like DNA-binding domain

cDNA / CDS / Protein Sequences

Download genomic DNA (gene region only)

Every public gene has transcript sequence from the reference annotation. Protein-coding genes also have CDS and protein sequences. CDS and protein downloads do not apply to noncoding RNA. Version suffixes of original accessions are retained.

cDNA

1 records

Download cDNA FASTA

XM_057927832.1
GTGGGATACGCAGGGTTAGGTTTCGAAATCACTCAAAAATACATATAAAAAGAAAAGGAAGCGGTGTGTGTGGTCTCTACTGTCTATATATAGATAGAAAACGTGGTTAGTGATTTGGTAGATAACAAAAATTGGAGATGATGGGGAGATCTCCGTGCTGCGACGAGAGTGGTCTGAAAAAGGGGCCATGGACTCCCGAAGAAGACGATAAACTCATAAACTACATCCACAAACACGGCCACGGCAGCTGGCGCGCTCTC...

CDS

1 records

Download CDS FASTA

LOC131001433
ATGATGGGGAGATCTCCGTGCTGCGACGAGAGTGGTCTGAAAAAGGGGCCATGGACTCCCGAAGAAGACGATAAACTCATAAACTACATCCACAAACACGGCCACGGCAGCTGGCGCGCTCTCCCCAAACTTGCAGGTTTGAACAGATGTGGTAAGAGCTGCAGACTGCGATGGACTAACTATCTCCGCCCGGATATCAAGAGAGGCAAATTCTCCCAAGAAGAGGAGCAAACCATCCTCAATCTCCACGCCATTCTTGG...

Protein

1 records

Download Protein FASTA

XP_057783815.1
MMGRSPCCDESGLKKGPWTPEEDDKLINYIHKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSQEEEQTILNLHAILGNKWSAIATHLPGRTDNEIKNFWNTHLKKKLIQMGFDPMTHRPRTDIFSTLPHLIALANLIENPSWEDQAMRIHNDALHMARLNNYLTYILQPPSSDLLLNLPPQQQQQHQPYNFQDSLAFAHMPDLIPATAAGPDASWMAPLTETSITNTNTNTNTNTNTGDACSTSSYGGAQ...

Flanking Sequence Downloads

Upstream/downstream length is capped at 10000 bp. Negative-strand genes are reverse-complemented so the exported FASTA follows transcriptional 5′ to 3′ orientation.

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