当前解析结果
SmilChr08G001994| 统一新 Gene ID | SmilChr08G001994 |
|---|---|
| 名称 | SmilChr08G001994 |
| 描述 | probable rhamnogalacturonate lyase B |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 17668995 - 17671465 / - |
| NCBI Gene ID | LOC131001708 |
|---|---|
| GeneID | 131001708 |
| locus_tag | - |
| NCBI Name | LOC131001708 |
| 原始查询 | SmilChr08G001994 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | probable rhamnogalacturonate lyase B |
| 产物 | probable rhamnogalacturonate lyase B |
| Arabidopsis | AT1G09890 (AT1G09890)Rhamnogalacturonate lyase family protein [Source:NCBI gene (formerly Entrezgene);Acc:837521] identity=58.9; qcov=1.01; evalue=0; confidence=high |
| Rice | Os08g0554100- identity=59.5; qcov=1.01; evalue=0; confidence=high |
| GO | GO:0003824 (catalytic activity); GO:0005975 (carbohydrate metabolic process); GO:0030246 (carbohydrate binding) |
| KEGG | - |
| Pfam | PF06045 (Rhamnogal_lyase); PF14683 (CBM-like); PF14686 (fn3_3) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131001708 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Secreted | 分泌到胞外 | 1.00000 | XP_057784272.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057784272.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057784272.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057784272.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057784272.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:17669313 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B99 |
Chr8:17669433 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B122 |
Chr8:17669456 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B51,C35 |
Chr8:17669657 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C22 |
Chr8:17669829 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B9,C20,C37,C85 |
Chr8:17669838 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B15,C15 |
Chr8:17669861 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B122,B66,B8,B99,D3 |
Chr8:17670108 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C35 |
Chr8:17670188 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B17 |
Chr8:17670303 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B108 |
Chr8:17670360 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A19,B17,B68,B84,C21 |
Chr8:17670374 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B56,B96 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057784272.1PF06045
Rhamnogal_lyase 1-84 aa
PF14686
fn3_3 236-309 aa
PF14683
CBM-like 323-511 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057784272.1 |
Pfam | PF06045 |
Rhamnogal_lyase | Family | 1 | 84 | 6.1e-34 | 118.0 | Rhamnogalacturonate lyase family |
XP_057784272.1 |
Pfam | PF14686 |
fn3_3 | Domain | 236 | 309 | 5.8e-26 | 90.8 | Polysaccharide lyase family 4, domain II |
XP_057784272.1 |
Pfam | PF14683 |
CBM-like | Domain | 323 | 511 | 4.8e-48 | 163.8 | Polysaccharide lyase family 4, domain III |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。