Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G003267`

染色体: Chr08 坐标: 33688842-33689931 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G003267`
名称	SmilChr08G003267
描述	transcription factor MYB27-like
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	33688842 - 33689931 / `+`

ID 对照

NCBI Gene ID	`LOC130997837`
GeneID	`130997837`
locus_tag	`-`
NCBI Name	`LOC130997837`
原始查询	`SmilChr08G003267`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	transcription factor MYB27-like
产物	transcription factor MYB27-like
Arabidopsis	`AT3G53200` (MYB27) myb domain protein 27 [Source:NCBI gene (formerly Entrezgene);Acc:824486] identity=47.9; qcov=1.05; evalue=1.02e-54; confidence=high
Rice	`Os11g0700500` (MYBAS1) - identity=69.8; qcov=0.576; evalue=1.97e-52; confidence=medium
GO	GO:0003700 (DNA-binding transcription factor activity); GO:0005634 (nucleus); GO:0006355 (regulation of DNA-templated transcription); GO:0043565 (sequence-specific DNA binding)
KEGG	-
Pfam	PF00249 (Myb_DNA-binding); PF13921 (Myb_DNA-bind_6)
InterPro	-
eggNOG	-
NR	GeneID:130997837

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057779249.1`
2	Chromosome	染色体	0.00000	`XP_057779249.1`
3	Centromere	着丝粒	0.00000	`XP_057779249.1`
4	Chromatin	染色质	0.00000	`XP_057779249.1`
5	Telomere	端粒	0.00000	`XP_057779249.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:33689131`	`GC`	`G`	1bp_deletion	frameshift_variant	234	A1,A10,A13,A14,A15,A16,A18,A19,A2,A20,A21,A22,A23,A24,A25,A3,A5,A6,A7,A8,A9,B1,B10,B100,B101,B102,B103,B104,B105,B106,B107,B108,B11,B110,B111,B114,B117,B118,B119,B12,B121,B123,B124,B125,B126,B128,B129,B13,B130,B131,B132,B133,B134,B135,B136,B137,B138,B139,B14,B140,B15,B16,B17,B18,B19,B2,B20,B21,B22,B23,B24,B26,B27,B28,B29,B3,B30,B31,B32,B33,B34,B35,B36,B37,B38,B4,B40,B41,B42,B43,B45,B46,B47,B48,B49,B5,B50,B52,B53,B54,B55,B56,B57,B58,B59,B6,B60,B61,B63,B64,B66,B67,B68,B69,B7,B70,B71,B72,B73,B74,B75,B77,B78,B8,B80,B81,B82,B83,B84,B85,B86,B87,B88,B89,B9,B90,B91,B92,B93,B94,B95,B96,B97,B98,C1,C10,C11,C13,C14,C15,C16,C17,C18,C19,C2,C20,C21,C22,C23,C24,C25,C26,C27,C28,C29,C3,C30,C32,C33,C34,C35,C36,C37,C38,C39,C4,C40,C41,C42,C45,C46,C47,C48,C49,C5,C50,C51,C52,C53,C54,C55,C56,C57,C58,C59,C6,C60,C61,C62,C63,C64,C65,C67,C68,C69,C7,C70,C71,C72,C73,C74,C75,C76,C77,C78,C79,C8,C81,C82,C84,C85,C87,C9,D1,D10,D11,D2,D3,D4,D5,D6,D7,D8,D9
`Chr8:33689140`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B26,B27,B55,C17,C71
`Chr8:33689154`	`G`	`A`	EMS_canonical_SNV	stop_gained	1	B59
`Chr8:33689154`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B59
`Chr8:33689177`	`TG`	`T`	1bp_deletion	frameshift_variant	1	B27
`Chr8:33689177`	`TG`	`T`	1bp_deletion	CDS_variant	1	B27
`Chr8:33689185`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A2,B110,B37,B70
`Chr8:33689334`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C39
`Chr8:33689699`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C11,C69

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057779249.1

192 aa

192

Myb_DNA-binding

Myb_DNA-bind_6

Myb_DNA-binding

Myb_DNA-bind_6

PF00249 Myb_DNA-binding 8-63 aa PF13921 Myb_DNA-bind_6 11-77 aa PF00249 Myb_DNA-binding 70-113 aa PF13921 Myb_DNA-bind_6 73-114 aa

XP_057779250.1

184 aa

184

Myb_DNA-binding

Myb_DNA-bind_6

Myb_DNA-binding

Myb_DNA-bind_6

PF00249 Myb_DNA-binding 8-55 aa PF13921 Myb_DNA-bind_6 11-69 aa PF00249 Myb_DNA-binding 62-105 aa PF13921 Myb_DNA-bind_6 65-107 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057779249.1`	Pfam	`PF00249`	Myb_DNA-binding	Domain	8	63	2.4e-31	108.3	Myb-like DNA-binding domain
`XP_057779249.1`	Pfam	`PF13921`	Myb_DNA-bind_6	Domain	11	77	1.1e-16	61.5	Myb-like DNA-binding domain
`XP_057779249.1`	Pfam	`PF00249`	Myb_DNA-binding	Domain	70	113	2.4e-31	108.3	Myb-like DNA-binding domain
`XP_057779249.1`	Pfam	`PF13921`	Myb_DNA-bind_6	Domain	73	114	1.1e-16	61.5	Myb-like DNA-binding domain
`XP_057779250.1`	Pfam	`PF00249`	Myb_DNA-binding	Domain	8	55	1.6e-33	115.3	Myb-like DNA-binding domain
`XP_057779250.1`	Pfam	`PF13921`	Myb_DNA-bind_6	Domain	11	69	1.1e-17	64.7	Myb-like DNA-binding domain
`XP_057779250.1`	Pfam	`PF00249`	Myb_DNA-binding	Domain	62	105	1.6e-33	115.3	Myb-like DNA-binding domain
`XP_057779250.1`	Pfam	`PF13921`	Myb_DNA-bind_6	Domain	65	107	1.1e-17	64.7	Myb-like DNA-binding domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057923266.1
TGCAGCTGAAGCATTTGCAACACAACGACTGATGGAACATTATGTCACCTAAATTAAATGAAAACTTAAGCAAATGGTGGTGGAGATCACATATTCTAGTGTGCTCCACTTTCTCTGCTAATGAAAGATGTTTTGGTCACGCCCCTTTTCCTTTAATATTTTCCCTTCCCCCTGTTTTAGCAAAAAAAAAATTGCTTATTTTTGAGCTCCTGTTTAGCAACTTTTTCCCCTAGTATAATATATGCTGGGACTAACTCAAC...

XM_057923267.1
ATTTGCAACACAACGACTGATGGAACATTATGTCACCTAAATTAAATGAAAACTTAAGCAAATGGTGGTGGAGATCACATATTCTAGTGTGCTCCACTTTCTCTGCTAATGAAAGATGTTTTGGTCACGCCCCTTTTCCTTTAATATTTTCCCTTCCCCCTGTTTTAGCAAAAAAAAAATTGCTTATTTTTGAGCTCCTGTTTAGCAACTTTTTCCCCTAGTATAATATATGCTGGGACTAACTCAACTTTTTTGAAGCA...

CDS

2 records

下载 CDS FASTA

LOC130997837
ATGCAGGAAGCCGAGGTGCGTAAAGGGCCGTGGCTGGAGGAAGAAGACAATCAGCTGGCTGCTGCTGTTGCTGTTTTGGGAGATAAAAGATGGGATGCATTAGCCAAAGCATCAGATGAAGTCTGTATGTTTGATGCAGGGCTAAGGAGGAGTGGCAAGAGCTGCAGGCTGCGATGGATGAACTATCTGCGTCCCAATCTGAAGCACGGCAACATCTCCGTTGAAGAAGAGCGAATCATCATCGACCTCCATCAGAAATG...

LOC130997837
ATGCAGGAAGCCGAGGTGCGTAAAGGGCCGTGGCTGGAGGAAGAAGACAATCAGCTGGCTGCTGCTGTTGCTGTTTTGGGAGATAAAAGATGGGATGCATTAGCCAAAGCATCAGGGCTAAGGAGGAGTGGCAAGAGCTGCAGGCTGCGATGGATGAACTATCTGCGTCCCAATCTGAAGCACGGCAACATCTCCGTTGAAGAAGAGCGAATCATCATCGACCTCCATCAGAAATGGGGAAACAGGTGGTCCAAGATCGC...

Protein

2 records

下载 Protein FASTA

XP_057779249.1
MQEAEVRKGPWLEEEDNQLAAAVAVLGDKRWDALAKASDEVCMFDAGLRRSGKSCRLRWMNYLRPNLKHGNISVEEERIIIDLHQKWGNRWSKIARRLPGRTDNEIKNYWRSHSKKKAPVMDKECTKNTSLRSECATTTPIKSDIFDATTSPYEARLTDWMSNWPPDDSLDSKLYSPEWSSTTWDISLWDGE

XP_057779250.1
MQEAEVRKGPWLEEEDNQLAAAVAVLGDKRWDALAKASGLRRSGKSCRLRWMNYLRPNLKHGNISVEEERIIIDLHQKWGNRWSKIARRLPGRTDNEIKNYWRSHSKKKAPVMDKECTKNTSLRSECATTTPIKSDIFDATTSPYEARLTDWMSNWPPDDSLDSKLYSPEWSSTTWDISLWDGE

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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