当前解析结果
SmilChr08G004213| 统一新 Gene ID | SmilChr08G004213 |
|---|---|
| 名称 | SmilChr08G004213 |
| 描述 | wall-associated receptor kinase-like 10 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 51512838 - 51514396 / + |
| NCBI Gene ID | LOC130998944 |
|---|---|
| GeneID | 130998944 |
| locus_tag | - |
| NCBI Name | LOC130998944 |
| 原始查询 | SmilChr08G004213 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | wall-associated receptor kinase-like 10 |
| 产物 | wall-associated receptor kinase-like 10 |
| Arabidopsis | AT1G69730 (AT1G69730)Wall-associated kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:843309] identity=52; qcov=0.911; evalue=1.26e-147; confidence=high |
| Rice | Os04g0366000- identity=47.9; qcov=0.947; evalue=5.38e-122; confidence=high |
| GO | GO:0004674 (protein serine/threonine kinase activity); GO:0005509 (calcium ion binding); GO:0005524 (ATP binding); GO:0005886 (plasma membrane); GO:0006468 (protein phosphorylation); GO:0007166 (cell surface receptor signaling pathway) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF07714 (PK_Tyr_Ser-Thr) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130998944 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057780366.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057780366.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057780366.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057780366.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057780366.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:51512953 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr8:51512954 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B33,B49,C32,C68 |
Chr8:51512962 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B2,C43,D5 |
Chr8:51513019 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B140,C48,C81 |
Chr8:51513051 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B130,B19,B22,C9 |
Chr8:51513068 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B130,B19,B22,C83,C9 |
Chr8:51513253 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B2,C43,D5 |
Chr8:51513290 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B77 |
Chr8:51513294 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr8:51513295 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr8:51513314 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B140,C48,C81 |
Chr8:51513338 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A21,B66,B79,B8,D10 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057780366.1PF00069
Pkinase 133-398 aa
PF07714
PK_Tyr_Ser-Thr 137-401 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057780366.1 |
Pfam | PF00069 |
Pkinase | Domain | 133 | 398 | 1.1e-42 | 146.9 | Protein kinase domain |
XP_057780366.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 137 | 401 | 4.9e-43 | 148.0 | Protein tyrosine and serine/threonine kinase |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。