Public data scope: Chr01–Chr08. Module and data release manifest

Salvia miltiorrhiza · Red Sage Omics

About Red Sage Omics

Red Sage Omics is an integrated portal for the Salvia miltiorrhiza reference genome, multi-omics annotations, and prediction results. It brings gene identifiers, sequences, expression, variants, regulation, localization, domains, and interactions into one searchable resource.

Data Statistics

38157Gene records
46325Protein sequences
527519Searchable ID aliases
38157ID mapping records
115662Pfam domain hits
231625Subcellular top-5 records
14Expression studies
139Expression samples
573241Precomputed PPI candidates
768225EMS candidate variants
257TF motifs
AvailableJBrowse

Platform Modules

Gene Card

Integrates ID mapping, coordinates, sequences, annotations, localization, expression, variants, and browser links.

Functional Annotation

Designed for GO, KEGG, Pfam, InterPro, eggNOG, NR, and future annotation layers.

Expression and Co-expression

Query expression profiles and compute gene-gene correlations from expression matrices.

Protein Function Prediction

Includes Pfam domains, subcellular localization, and protein interaction candidates.

Regulation and Variation

Includes TF binding site prediction and EMS functional variant search.

Sequence and Genome Tools

Provides BLAST, interval sequence retrieval, primer candidates, JBrowse, and downloads.

Citation and Maintenance

Recommended citation text can be updated here after the platform paper is finalized. The public interface should use Red Sage Omics and Salvia miltiorrhiza rather than pinyin as the display brand.

Maintenance: manage the web service and data updates through the server entry ssh school-server.

Contact

Northwest A&F University