Red Sage TF Binding Site Prediction

Scan Red Sage transcription factor binding motifs on submitted DNA sequences or 4000 bp upstream promoters.

257motifs

38157promoters

4000 bpprecomputed length

Evidence and Thresholds

This page scans the current Red Sage 4 kb promoter sequences with PWM motifs to return candidate sites. The default 0.95 value is a normalized PWM-score filter, not a P-value or FDR threshold calibrated by Red Sage ChIP, DAP-seq, EMSA, or reporter assays. Hits can support experimental design but do not alone prove TF binding or regulation in Red Sage.

Red Sage TF Binding Site Prediction

Evidence and Thresholds

Scan 4000 bp Upstream by Gene ID

Scan Submitted DNA Sequence