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Red Sage EMS Mutant Variants

This module serves curated EMS functional variants: rare typical EMS CDS sites and LoF/CDS candidates. Search by Gene ID, material ID, or genomic interval.
768225candidate sites
260EMS materials
4185536sample-site links
Examples
Examples
Examples

Download results

EMS Material Leaf Phenotypes

Phenotypes come from the checked 20260624 leaf phenotype table. Use the Material ID box above to filter IDs such as A10 or B101.

Download phenotype TSV
Material ID Plant height (cm) Stem base (cm) Leaf length (cm) Leaf width (cm) Leaf area proxy (cm2) Leaf color Leaf shape
A10 50.0 55.0 9.0 6.0 54.0 浅绿 间圆
A11 40.0 40.0 8.0 5.0 40.0 浅色 间圆
A12 39.0 42.0 7.0 5.2 36.4 浅绿 尖
A13 40.0 36.0 4.5 3.2 14.4 绿 间圆
A14 58.0 43.0 8.0 4.5 36.0 浅绿 尖
A15 55.0 40.0 6.5 5.5 35.75 绿 圆
A16 50.0 35.0 4.5 4.0 18.0 浅绿 间圆
A17 25.0 40.0 6.0 5.8 34.8 浅绿 圆
A18 42.0 40.0 5.5 4.0 22.0 深绿 间圆
A19 48.0 55.0 7.0 5.0 35.0 深绿 间尖
A2 30.0 30.0 7.0 4.0 28.0 浅绿 间圆
A20 58.0 50.0 5.5 5.0 27.5 绿 间圆
A21 48.0 40.0 4.0 3.5 14.0 浅绿 间尖
A22 44.0 35.0 10.0 7.0 70.0 浅绿 有尖有圆
A23 45.0 40.0 8.0 6.0 48.0 浅绿 尖
A24 45.0 30.0 4.5 3.8 17.1 绿 间尖
A25 45.0 30.0 7.0 5.0 35.0 绿 间尖
A27 48.0 45.0 6.0 5.2 31.2 绿 偏圆
A3 35.0 40.0 6.0 5.0 30.0 深绿 有尖有圆
A4 50.0 40.0 7.5 6.0 45.0 绿 间尖
A5 60.0 40.0 7.0 5.0 35.0 绿 尖
A6 46.0 40.0 7.0 5.0 35.0 深绿 尖
A7 55.0 45.0 4.0 3.0 12.0 绿 尖
A8 45.0 30.0 5.0 3.5 17.5 绿 尖
A9 52.0 30.0 5.0 4.0 20.0 深绿 有尖有圆
B1 65.0 40.0 6.0 4.0 24.0 绿 尖
B10 37.0 35.0 6.0 4.0 24.0 绿 间圆
B100 28.0 30.0 6.0 5.0 30.0 绿 间尖
B101 46.0 28.0 5.0 3.5 17.5 绿 尖
B102 47.0 30.0 6.0 5.0 30.0 浅绿 间尖
B103 30.0 30.0 5.0 4.0 20.0 浅绿 间尖
B104 37.0 40.0 6.0 5.0 30.0 绿 有尖有圆
B105 50.0 45.0 8.5 6.0 51.0 绿 尖
B106 50.0 40.0 6.0 5.0 30.0 绿 间尖
B107 50.0 40.0 8.0 6.5 52.0 浅绿 尖
B108 40.0 35.0 9.5 8.0 76.0 绿 间圆
B109 70.0 50.0 9.5 5.5 52.25 绿 间尖
B11 54.0 50.0 9.0 4.0 36.0 浅绿 尖
B110 50.0 40.0 7.0 6.0 42.0 绿 尖
B111 40.0 30.0 5.5 4.0 22.0 绿 尖
B112 40.0 50.0 6.0 4.0 24.0 翠绿 尖
B113 30.0 30.0 8.0 4.0 32.0 绿 间尖
B114 30.0 35.0 4.0 4.0 16.0 绿 间圆
B115 28.0 35.0 6.0 4.5 27.0 浅绿 间尖
B116 42.0 30.0 5.0 4.0 20.0 深绿 间尖
B117 52.0 40.0 6.0 4.0 24.0 深绿 尖
B118 30.0 40.0 6.0 5.0 30.0 浅绿 间圆
B119 36.0 35.0 5.0 3.5 17.5 浅绿 间尖
B12 36.0 40.0 7.0 4.0 28.0 浅绿 尖
B120 25.0 40.0 5.0 4.0 20.0 浅绿 间尖
B121 37.0 30.0 6.0 4.0 24.0 绿 尖
B122 55.0 30.0 8.0 4.0 32.0 绿 尖
B123 35.0 28.0 6.0 4.5 27.0 浅绿 间圆
B124 32.0 20.0 5.0 4.0 20.0 深绿 尖
B125 30.0 30.0 5.0 3.0 15.0 绿 间尖
B126 50.0 40.0 4.0 4.0 16.0 深绿 尖
B127 40.0 30.0 5.0 4.0 20.0 绿 尖
B128 35.0 40.0 7.0 5.0 35.0 绿 尖
B129 50.0 45.0 7.0 5.5 38.5 浅绿 间尖
B13 32.0 34.0 7.0 5.0 35.0 绿 尖
B130 35.0 25.0 5.5 5.0 27.5 绿 间圆
B131 45.0 45.0 8.0 5.0 40.0 浅绿 尖
B132 12.0 20.0 6.0 3.5 21.0 浅绿 间尖
B133 55.0 40.0 7.0 5.0 35.0 绿 间圆
B134 30.0 35.0 9.0 6.0 54.0 绿 间尖
B135 25.0 45.0 5.0 5.2 26.0 绿 圆
B136 38.0 35.0 - - - 深绿 尖
B137 40.0 50.0 7.0 5.2 36.4 绿 尖
B138 50.0 35.0 6.0 5.0 30.0 绿 间尖
B139 38.0 25.0 8.0 6.0 48.0 深 尖
B14 38.0 30.0 6.0 4.5 27.0 浅绿 间尖
B15 38.0 30.0 6.0 6.0 36.0 绿 尖
B16 32.0 30.0 5.0 5.0 25.0 深绿 间尖
B17 48.0 50.0 8.0 6.0 48.0 绿 尖
B18 43.0 40.0 6.5 6.0 39.0 浅绿 圆
B2 25.0 35.0 7.5 5.0 37.5 绿 尖
B20 50.0 40.0 5.0 4.0 20.0 浅绿 间圆
B21 36.0 30.0 7.0 6.0 42.0 深绿 尖
B22 50.0 30.0 7.0 6.0 42.0 浅绿 尖
B23 46.0 20.0 7.0 6.0 42.0 绿 间圆
B24 40.0 30.0 6.0 5.5 33.0 绿 间尖
B25 40.0 25.0 5.0 5.0 25.0 深绿 尖
B26 43.0 30.0 5.5 4.0 22.0 绿 间圆
B28 50.0 40.0 6.0 3.0 18.0 绿 间尖
B29 35.0 40.0 6.0 4.5 27.0 浅绿 间尖
B3 48.0 26.0 7.0 4.0 28.0 浅绿 间尖
B30 50.0 30.0 7.0 5.0 35.0 浅绿 有尖有圆
B31 67.0 50.0 5.5 5.0 27.5 绿 圆
B32 45.0 30.0 6.0 4.5 27.0 黄绿 尖
B33 53.0 35.0 5.5 4.5 24.75 绿 间尖
B34 45.0 40.0 8.0 4.0 32.0 绿 间尖
B35 45.0 30.0 7.0 5.0 35.0 绿 尖
B36 40.0 40.0 8.5 4.5 38.25 绿 尖
B37 30.0 60.0 6.0 5.0 30.0 绿 间尖
B38 30.0 40.0 5.0 4.0 20.0 浅绿 圆
B39 30.0 30.0 7.0 4.0 28.0 绿 间尖
B4 62.0 35.0 7.0 5.0 35.0 深绿 间尖
B40 32.0 35.0 5.0 5.0 25.0 浅绿 间尖
B41 50.0 30.0 7.0 5.0 35.0 浅绿 间圆
B42 44.0 40.0 5.0 4.0 20.0 深绿 间圆

Results

Matched 10 sites; the page shows up to the first 200. Resolved gene: SmilChr01G000001

Set Position REF ALT Type Effect Standard Gene ID Carrier N Samples Transcripts
typical_cds_rare Chr1:48973 C T EMS_canonical_SNV CDS_variant SmilChr01G000001 1 D11 rna-XM_057934302.1
typical_cds_rare Chr1:48981 G A EMS_canonical_SNV CDS_variant SmilChr01G000001 1 B101 rna-XM_057934302.1
typical_cds_rare Chr1:49495 G A EMS_canonical_SNV CDS_variant SmilChr01G000001 2 B115,B78 rna-XM_057934302.1, rna-XM_057934303.1, rna-XM_057934304.1
typical_cds_rare Chr1:49552 G A EMS_canonical_SNV CDS_variant SmilChr01G000001 1 C37 rna-XM_057934302.1, rna-XM_057934303.1, rna-XM_057934304.1
typical_cds_rare Chr1:49562 C T EMS_canonical_SNV CDS_variant SmilChr01G000001 1 C42 rna-XM_057934302.1, rna-XM_057934303.1, rna-XM_057934304.1
typical_cds_rare Chr1:49570 G A EMS_canonical_SNV CDS_variant SmilChr01G000001 3 C11,C69,C9 rna-XM_057934302.1, rna-XM_057934303.1, rna-XM_057934304.1
typical_cds_rare Chr1:49691 C T EMS_canonical_SNV CDS_variant SmilChr01G000001 1 B101 rna-XM_057934302.1, rna-XM_057934303.1, rna-XM_057934304.1
typical_cds_rare Chr1:49823 G A EMS_canonical_SNV CDS_variant SmilChr01G000001 1 B34 rna-XM_057934302.1, rna-XM_057934303.1, rna-XM_057934304.1
typical_cds_rare Chr1:49976 C T EMS_canonical_SNV CDS_variant SmilChr01G000001 5 B41,C26,C6,C76,C77 rna-XM_057934302.1, rna-XM_057934303.1, rna-XM_057934304.1
typical_cds_rare Chr1:50005 C T EMS_canonical_SNV CDS_variant SmilChr01G000001 1 C46 rna-XM_057934302.1, rna-XM_057934303.1, rna-XM_057934304.1