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Red Sage Protein Domain Prediction

Enter a Red Sage Gene ID, transcript ID, or protein ID to view Pfam domain predictions, an N-to-C protein schematic, and amino-acid start/end positions.
Examples

Pfam domain results are available.

Gene Information

Standard Gene IDSmilChr01G000001
Chromosome / SeqIDChr01 / NC_080387.1
Coordinates47739 - 50415
Strand+
Descriptiontranscription termination factor MTERF9, chloroplastic-like
3 protein records 6 Pfam domains

Domain Schematic

Domain results are from the Pfam-A HMM database and HMMER hmmscan; positions are amino-acid coordinates on the corresponding protein sequence.

XP_057790285.1
406 aa
N
1
203
406
mTERF
mTERF
C
PF02536 mTERF 91-164 aa PF02536 mTERF 153-363 aa
XP_057790286.1
362 aa
N
1
181
362
mTERF
mTERF
C
PF02536 mTERF 47-120 aa PF02536 mTERF 109-319 aa
XP_057790287.1
334 aa
N
1
167
334
mTERF
mTERF
C
PF02536 mTERF 19-92 aa PF02536 mTERF 81-291 aa
Protein ID Source Domain ID Domain name Type Start aa End aa E-value Score Description
XP_057790285.1 Pfam PF02536 mTERF Family 91 164 4.6e-38 131.6 mTERF
XP_057790285.1 Pfam PF02536 mTERF Family 153 363 4.6e-38 131.6 mTERF
XP_057790286.1 Pfam PF02536 mTERF Family 47 120 3e-38 132.2 mTERF
XP_057790286.1 Pfam PF02536 mTERF Family 109 319 3e-38 132.2 mTERF
XP_057790287.1 Pfam PF02536 mTERF Family 19 92 2.1e-38 132.7 mTERF
XP_057790287.1 Pfam PF02536 mTERF Family 81 291 2.1e-38 132.7 mTERF