Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G000226`

染色体: Chr05 坐标: 1764589-1772255 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G000226`
名称	SmilChr05G000226
描述	flowering locus K homology domain-like
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	1764589 - 1772255 / `+`

ID 对照

NCBI Gene ID	`LOC130984949`
GeneID	`130984949`
locus_tag	`-`
NCBI Name	`LOC130984949`
原始查询	`LOC130984949`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	flowering locus K homology domain-like
产物	flowering locus K homology domain-like
Arabidopsis	`AT3G04610` (FLK) RNA-binding KH domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:819619] identity=58.5; qcov=1; evalue=6.36e-180; confidence=high
Rice	`Os03g0627500` - identity=60.9; qcov=0.807; evalue=1.91e-145; confidence=high
GO	GO:0003729 (mRNA binding); GO:0005634 (nucleus); GO:0005737 (cytoplasm); GO:0010468 (regulation of gene expression)
KEGG	-
Pfam	PF00013 (KH_1)
InterPro	-
eggNOG	-
NR	GeneID:130984949

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057763629.1`
2	Cytoplasm	细胞质	0.60000	`XP_057763629.1`
3	Nucleoplasm	核质	0.20000	`XP_057763629.1`
4	Cytoplasmic granule	细胞质颗粒	0.20000	`XP_057763629.1`
5	Cytoplasmic ribonucleoprotein granule	Cytoplasmic ribonucleoprotein granule	0.20000	`XP_057763629.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:1766215`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B123,B84,C5
`Chr5:1766336`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr5:1766378`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A8,B79,C24,D6
`Chr5:1766379`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A21
`Chr5:1766458`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B68
`Chr5:1766459`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B76
`Chr5:1766486`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A11,B108,B122,B93,C23
`Chr5:1766487`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A11,B108,B122,B93,C23
`Chr5:1766493`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B15,B24,B41,C32,C68
`Chr5:1769424`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C44
`Chr5:1770386`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B100
`Chr5:1770426`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A20,B139,C57,D4

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057763629.1

514 aa

257

514

KH_1

PF00013 KH_1 117-169 aa PF00013 KH_1 209-276 aa PF00013 KH_1 389-452 aa

XP_057763630.1

513 aa

256

513

KH_1

PF00013 KH_1 117-169 aa PF00013 KH_1 209-275 aa PF00013 KH_1 388-451 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057763629.1`	Pfam	`PF00013`	KH_1	Domain	117	169	1e-43	147.6	KH domain
`XP_057763629.1`	Pfam	`PF00013`	KH_1	Domain	209	276	1e-43	147.6	KH domain
`XP_057763629.1`	Pfam	`PF00013`	KH_1	Domain	389	452	1e-43	147.6	KH domain
`XP_057763630.1`	Pfam	`PF00013`	KH_1	Domain	117	169	1.3e-43	147.3	KH domain
`XP_057763630.1`	Pfam	`PF00013`	KH_1	Domain	209	275	1.3e-43	147.3	KH domain
`XP_057763630.1`	Pfam	`PF00013`	KH_1	Domain	388	451	1.3e-43	147.3	KH domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057907647.1
AAGTTAGTAATATTCGACCAATATGAGGGTTAATTAGGGATTTACATCTCCTCTTTTGCGATTGCTGGCCTCAATTCAAATTGCTGATAAACTCTTACAATTGGATTTGTTGATTAACGATTTTTCTCTGCAATTGATAATTATATAGTTACACTTCGCCGGAAACCTAAGGCTAAAATTCCTCTAAAACCCTACATTTCTATCATCTTAAAATCTTCTCTCTCTCTCTCGCTCGCTCTCGCTCTCATCCATATCATGGC...

XM_057907646.1
ATATGAGGGTTAATTAGGGATTTACATCTCCTCTTTTGCGATTGCTGGCCTCAATTCAAATTGCTGATAAACTCTTACAATTGGATTTGTTGATTAACGATTTTTCTCTGCAATTGATAATTATATAGTTACACTTCGCCGGAAACCTAAGGCTAAAATTCCTCTAAAACCCTACATTTCTATCATCTTAAAATCTTCTCTCTCTCTCTCGCTCGCTCTCGCTCTCATCCATATCATGGCTGAACTTGATCAGAATCACG...

CDS

2 records

下载 CDS FASTA

LOC130984949
ATGGCTGAACTTGATCAGAATCACGAGGGTGAACAAGCTCATGGACAAGAATATGAACCTGAACAAGAAGTTGTGCATGAACATGAAAATGAAGTGGAGCATGAAAATGAAGTGGGACATGAAAATGAAGTGGAACATGAAAATGTAGTGGAACGTGAAATTGTAGTGGAACTTGAAAATGTAGCGGAACGTGAAATTGTAGTGGAACATGAGCATGAAAATGAAAAAGAAATTGCACCAGAAGATGTGATATCAGAGAA...

Protein

2 records

下载 Protein FASTA

XP_057763629.1
MAELDQNHEGEQAHGQEYEPEQEVVHEHENEVEHENEVGHENEVEHENVVEREIVVELENVAEREIVVEHEHENEKEIAPEDVISENSHPDAKQDHADEPVAGGGERWPGWPGESIFRMLVPAQKVGSIIGRKGEYIKKTCEETKARIKILDGPPGTRERAVMVSAKEEPDAPLPPAVDALLRVLRRVVDGLDNDSSEPPSGSGGKVSIKLLVPAPQAGSLIGKQGATVKSIQEESNCIVRVLGSEDLPVFALQDDRVVE...

XP_057763630.1
MAELDQNHEGEQAHGQEYEPEQEVVHEHENEVEHENEVGHENEVEHENVVEREIVVELENVAEREIVVEHEHENEKEIAPEDVISENSHPDAKQDHADEPVAGGGERWPGWPGESIFRMLVPAQKVGSIIGRKGEYIKKTCEETKARIKILDGPPGTRERAVMVSAKEEPDAPLPPAVDALLRVLRRVVDGLDNDSSEPPSGSGGKVSIKLLVPAPQAGSLIGKQGATVKSIQEESNCIVRVLGSDLPVFALQDDRVVEV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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