Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G000234`

染色体: Chr05 坐标: 1807807-1810723 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G000234`
名称	SmilChr05G000234
描述	uncharacterized SmilChr05G000234
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	1807807 - 1810723 / `-`

ID 对照

NCBI Gene ID	`LOC130984957`
GeneID	`130984957`
locus_tag	`-`
NCBI Name	`LOC130984957`
原始查询	`LOC130984957`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	TTF-type zinc finger protein with HAT dimerization domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:838509]; symbol=AT1G19260; hit=AT1G19260; species=arabidopsis; confidence=medium
产物	TTF-type zinc finger protein with HAT dimerization domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:838509]; symbol=AT1G19260; hit=AT1G19260; species=arabidopsis; confidence=medium
Arabidopsis	`AT1G19260` (AT1G19260) TTF-type zinc finger protein with HAT dimerization domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:838509] identity=42.8; qcov=0.942; evalue=1.84e-56; confidence=medium
Rice	`-` -
GO	GO:0046983 (protein dimerization activity)
KEGG	-
Pfam	PF05699 (Dimer_Tnp_hAT); PF14291 (DUF4371)
InterPro	-
eggNOG	-
NR	GeneID:130984957

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057763641.1`
2	Cytoplasm	细胞质	0.20000	`XP_057763641.1`
3	Chromosome	染色体	0.00000	`XP_057763642.1`
4	Centromere	着丝粒	0.00000	`XP_057763642.1`
5	Chromatin	染色质	0.00000	`XP_057763642.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:1807931`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C59
`Chr5:1807935`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A10
`Chr5:1807962`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B134
`Chr5:1807971`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A4,B111,B127
`Chr5:1807974`	`G`	`A`	EMS_canonical_SNV	stop_gained	3	A22,C34,C45
`Chr5:1807974`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A22,C34,C45
`Chr5:1808101`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A10
`Chr5:1808458`	`G`	`A`	EMS_canonical_SNV	stop_gained	1	C61
`Chr5:1808458`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C61
`Chr5:1808492`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B33,C29
`Chr5:1808519`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B55,C33,C61,C68
`Chr5:1808692`	`TTG`	`T`	2bp_deletion	frameshift_variant	6	A19,B122,B138,B72,C31,C5

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057763641.1

361 aa

180

361

DUF4371

Dimer_Tnp_hAT

PF14291 DUF4371 131-236 aa PF05699 Dimer_Tnp_hAT 268-319 aa

XP_057763642.1

243 aa

122

243

Dimer_Tnp_hAT

PF05699 Dimer_Tnp_hAT 150-201 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057763641.1`	Pfam	`PF14291`	DUF4371	Domain	131	236	6.5e-31	108.4	ZMYM1/FAM200, RNase-like domain
`XP_057763641.1`	Pfam	`PF05699`	Dimer_Tnp_hAT	Domain	268	319	7.1e-05	23.2	hAT family C-terminal dimerisation region
`XP_057763642.1`	Pfam	`PF05699`	Dimer_Tnp_hAT	Domain	150	201	3.2e-05	24.3	hAT family C-terminal dimerisation region

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057907658.1
TTGAATTTTTTTTTTTTTTAAATATAGAAATTAAAAATATTAATAAACTAAATAATCTGTAATAGAAATACAAACGGGAGTCGGGACAGAGACCCTAACCTCTTAACTCCCCCAAATTTGAGCGCCGCTTCCAGACCAGTCGCGGCGTCGCCCCTTTCCGGCACCACCGGTCAACTGCCGCTCGCGTTCCGCGCTGCCGCTGTGTCGAGGAGATTGAACCACCGCCGCTTCCAGTCTACTGCGTCGAGAAGATTGAGAAA...

XM_057907659.1
GATACTGTGAAAGTTCAATTACACGACTTCAGGATGACTGGATGGGAGATGATTTTGGAGGGAGTCAACAGATTTTGTGAGGTGAATGATATTCCCTTGATTCATATGGAAGACACTATAACTCGACCTGGTTACAAGAGGCAAAGCATCACCAATGATCATTATTATCGTGTGGAGATTTTTAATGAGGTTGTTGATCTAACAATACAAGAGCTAAACACTCGGTTTTCCGAAGCTAGCACTAATTTGCTTAGATGCAT...

CDS

2 records

下载 CDS FASTA

LOC130984957
ATGGAACGTTTTTTTTCTAAAAAACGTAGAGGTCAACCATCTTGTGATTCAGCTACACCTGCTATTGAAGTCAATGTAGAAGTTGAAGCCAATGTAGAAGATGAAACAAATTTTGATGAATACGTCCGTGATCCGGGGTTAAGAAAGCCAATTGAGGAGTTTCCTATTACTATTCGCGATCAAGCACGTAGAGAGTACTTATCTATGGGGCCTTGTCAAGTAGTTGGGCATACCTATCCGAAAACTCAATTTGGTAATCA...

LOC130984957
ATGACTGGATGGGAGATGATTTTGGAGGGAGTCAACAGATTTTGTGAGGTGAATGATATTCCCTTGATTCATATGGAAGACACTATAACTCGACCTGGTTACAAGAGGCAAAGCATCACCAATGATCATTATTATCGTGTGGAGATTTTTAATGAGGTTGTTGATCTAACAATACAAGAGCTAAACACTCGGTTTTCCGAAGCTAGCACTAATTTGCTTAGATGCATGGCGTGTCTTGATCCGAGAAATAATTTCTCCCA...

Protein

2 records

下载 Protein FASTA

XP_057763641.1
MERFFSKKRRGQPSCDSATPAIEVNVEVEANVEDETNFDEYVRDPGLRKPIEEFPITIRDQARREYLSMGPCQVVGHTYPKTQFGNQLRSFQDVWYQKFVWLEYSVAKDACFCFWCYIFKHPDKTGRYGADAFTKTGFTNWKKALIKFVEHVGDADSCHNNARVQIEAFKNQRGSMVNMFRSNACEVNIAYRARLTASLDVTRFLLKQGLSFRGHDESNSSSNRGDCLCLPQQLRNFIAFVRNDSRFSTITNLGSLAQEM...

XP_057763642.1
MTGWEMILEGVNRFCEVNDIPLIHMEDTITRPGYKRQSITNDHYYRVEIFNEVVDLTIQELNTRFSEASTNLLRCMACLDPRNNFSQFNIDQLMRFTTLYPEDFGPGDCLCLPQQLRNFIAFVRNDSRFSTITNLGSLAQEMVKSGNHLVFRMIELTLVLPVATASVERAFSAMKIVKTDLRNRMKDEWMNDSLVVYIEKEIFSTIDNEKILQRFQSMSTRRNQLSFLSQTETTSSGSPSVYS

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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