当前解析结果
SmilChr05G000232| 统一新 Gene ID | SmilChr05G000232 |
|---|---|
| 名称 | SmilChr05G000232 |
| 描述 | uncharacterized SmilChr05G000232 |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 1802963 - 1804378 / + |
| NCBI Gene ID | LOC130984961 |
|---|---|
| GeneID | 130984961 |
| locus_tag | - |
| NCBI Name | LOC130984961 |
| 原始查询 | LOC130984961 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase epsilon-1, putative (DUF1685) [Source:NCBI gene (formerly Entrezgene);Acc:837401]; symbol=AT1G08790; hit=AT1G08790; species=arabidopsis; confidence=high |
| 产物 | 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase epsilon-1, putative (DUF1685) [Source:NCBI gene (formerly Entrezgene);Acc:837401]; symbol=AT1G08790; hit=AT1G08790; species=arabidopsis; confidence=high |
| Arabidopsis | AT1G08790 (AT1G08790)1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase epsilon-1, putative (DUF1685) [Source:NCBI gene (formerly Entrezgene);Acc:837401] identity=55.9; qcov=0.837; evalue=1.66e-53; confidence=high |
| Rice | Os04g0282200- identity=42.5; qcov=0.926; evalue=2.38e-38; confidence=medium |
| GO | - |
| KEGG | - |
| Pfam | PF07939 (DUF1685) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130984961 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057763646.1 |
| 2 | Nucleus | 细胞核 | 0.60000 | XP_057763646.1 |
| 3 | Cytosol | 细胞质基质 | 0.60000 | XP_057763646.1 |
| 4 | Cell membrane | 细胞膜 | 0.20000 | XP_057763646.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057763646.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:1803313 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B16 |
Chr5:1803381 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A20,B139,C2,C57,D4 |
Chr5:1803387 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B80,B95 |
Chr5:1803561 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B104,B41 |
Chr5:1803576 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B108,B131,C4,C52 |
Chr5:1803624 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C17 |
Chr5:1803633 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B11,B134,B62,B74 |
Chr5:1803657 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C74 |
Chr5:1803679 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B119,B58,B82 |
Chr5:1803690 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B104,B12 |
Chr5:1803735 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B11,B134,B62,B74 |
Chr5:1803737 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B76 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057763646.1PF07939
DUF1685 79-130 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057763646.1 |
Pfam | PF07939 |
DUF1685 | Family | 79 | 130 | 6.7e-25 | 87.4 | Protein of unknown function (DUF1685) |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。