Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr05G000232

染色体: Chr05 坐标: 1802963-1804378 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr05G000232
名称SmilChr05G000232
描述uncharacterized SmilChr05G000232
染色体 / SeqIDChr05 / NC_080391.1
坐标与链方向1802963 - 1804378 / +

ID 对照

NCBI Gene IDLOC130984961
GeneID130984961
locus_tag-
NCBI NameLOC130984961
原始查询LOC130984961

查看完整 ID 对照表

功能注释

来源GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase epsilon-1, putative (DUF1685) [Source:NCBI gene (formerly Entrezgene);Acc:837401]; symbol=AT1G08790; hit=AT1G08790; species=arabidopsis; confidence=high
产物1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase epsilon-1, putative (DUF1685) [Source:NCBI gene (formerly Entrezgene);Acc:837401]; symbol=AT1G08790; hit=AT1G08790; species=arabidopsis; confidence=high
ArabidopsisAT1G08790 (AT1G08790)
1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase epsilon-1, putative (DUF1685) [Source:NCBI gene (formerly Entrezgene);Acc:837401]
identity=55.9; qcov=0.837; evalue=1.66e-53; confidence=high
RiceOs04g0282200
-
identity=42.5; qcov=0.926; evalue=2.38e-38; confidence=medium
GO-
KEGG-
PfamPF07939 (DUF1685)
InterPro-
eggNOG-
NRGeneID:130984961

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cytoplasm 细胞质 1.00000 XP_057763646.1
2 Nucleus 细胞核 0.60000 XP_057763646.1
3 Cytosol 细胞质基质 0.60000 XP_057763646.1
4 Cell membrane 细胞膜 0.20000 XP_057763646.1
5 Chromosome 染色体 0.00000 XP_057763646.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr5:1803313 G A EMS_canonical_SNV CDS_variant 1 B16
Chr5:1803381 G A EMS_canonical_SNV CDS_variant 5 A20,B139,C2,C57,D4
Chr5:1803387 G A EMS_canonical_SNV CDS_variant 2 B80,B95
Chr5:1803561 C T EMS_canonical_SNV CDS_variant 2 B104,B41
Chr5:1803576 G A EMS_canonical_SNV CDS_variant 4 B108,B131,C4,C52
Chr5:1803624 C T EMS_canonical_SNV CDS_variant 1 C17
Chr5:1803633 C T EMS_canonical_SNV CDS_variant 4 B11,B134,B62,B74
Chr5:1803657 C T EMS_canonical_SNV CDS_variant 1 C74
Chr5:1803679 C T EMS_canonical_SNV CDS_variant 3 B119,B58,B82
Chr5:1803690 G A EMS_canonical_SNV CDS_variant 2 B104,B12
Chr5:1803735 C T EMS_canonical_SNV CDS_variant 4 B11,B134,B62,B74
Chr5:1803737 C T EMS_canonical_SNV CDS_variant 1 B76

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057763646.1
203 aa
N
1
102
203
DUF1685
C
PF07939 DUF1685 79-130 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057763646.1 Pfam PF07939 DUF1685 Family 79 130 6.7e-25 87.4 Protein of unknown function (DUF1685)

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057907663.1
GGAATCAATGGCCTTCGCCTCTCATTTCGTCTCTTCAAACCTACTTCTTCTGCTCCTTCCTTTCCTATCGCCTCCATCCAAATCCATTTACACCTCAACAGATTCAATAATCCGTTAATTCTTCCTTCCCACACCGCACAGAGCTCGCGCCGCCACCTCTACGGCGGCCCGAGGCGGTTCCCCACCCACCTCCCGCCGCGGCCGCCGCCAACACCACGCTAGAAATAGCTAATCGATCGGTTTTAGTAAATTTTTCGAAT...

CDS

1 records

下载 CDS FASTA
LOC130984961
ATGGGAGATCCGCGAAACTCATACGACTACTGCGCAGCAGCCGAGCCGCCTCCGTCGTCCGCGTCGTCGTCGTCCCAGTCGTACGTCTCCGAGGGCGAGGACGCGCCGCCGCTGTGGACGAAGAAGCGCACGCTGACGAAGCAGCTGTCGATGCGCGAGGTGCCGCGCAACATCGCGTGGGAGCGGCGGCGGCGGCAGGTCCAGCAGCAGGAGCGGCGGAAGAGCGAGGAGGATCTGACGGACGAGGATCTGAACGAGCT...

Protein

1 records

下载 Protein FASTA
XP_057763646.1
MGDPRNSYDYCAAAEPPPSSASSSSQSYVSEGEDAPPLWTKKRTLTKQLSMREVPRNIAWERRRRQVQQQERRKSEEDLTDEDLNELKGCIELGFGFNAEEGQRLCTTIPALDLYFAVNRQFLTSPLTSPGSTAPTRPPPAPAPAPAPAPLPPTTLSIRSCSFGDSDSWKILNKGDDPQQVKTKLRHWAQAVACSVMQSPVPH

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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