Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G000250`

染色体: Chr05 坐标: 1906643-1911558 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G000250`
名称	SmilChr05G000250
描述	late blight resistance protein R1-A-like
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	1906643 - 1911558 / `+`

ID 对照

NCBI Gene ID	`LOC130984971`
GeneID	`130984971`
locus_tag	`-`
NCBI Name	`LOC130984971`
原始查询	`LOC130984971`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	late blight resistance protein R1-A-like
产物	late blight resistance protein R1-A-like
Arabidopsis	`AT5G43470` (RPP8) Disease resistance protein (CC-NBS-LRR class) family [Source:NCBI gene (formerly Entrezgene);Acc:834367] identity=27.4; qcov=1.03; evalue=3.32e-71; confidence=low
Rice	`Os07g0186500` - identity=27.7; qcov=0.993; evalue=2.62e-65; confidence=low
GO	GO:0043531 (ADP binding); GO:0098542 (defense response to other organism)
KEGG	-
Pfam	PF00931 (NB-ARC); PF23559 (WHD_DRP); PF23598 (LRR_14)
InterPro	-
eggNOG	-
NR	GeneID:130984971

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	0.80000	`XP_057763658.1`
2	Cytosol	细胞质基质	0.20000	`XP_057763658.1`
3	Nucleus	细胞核	0.00000	`XP_057763658.1`
4	Chromosome	染色体	0.00000	`XP_057763658.1`
5	Centromere	着丝粒	0.00000	`XP_057763658.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:1907186`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B35,B56,C24
`Chr5:1907190`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C60,C72
`Chr5:1907194`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C33
`Chr5:1907197`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A10,A22
`Chr5:1907200`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B41
`Chr5:1907202`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B104,B121,B21,B93,C28
`Chr5:1907214`	`A`	`AAT`	2bp_insertion	frameshift_variant	18	B121,B13,B15,B19,B26,B36,B42,B60,B77,B86,B93,C23,C3,C37,C40,C41,C74,C83
`Chr5:1907248`	`AAG`	`A`	2bp_deletion	frameshift_variant	9	B138,B69,B83,C1,C42,C63,C64,C66,D5
`Chr5:1907267`	`CGT`	`C`	2bp_deletion	frameshift_variant	15	B108,B130,B34,B68,B74,B78,C13,C4,C41,C50,C63,C76,C85,D1,D2
`Chr5:1907325`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B53,B70
`Chr5:1907334`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	C25,C69,D10
`Chr5:1907392`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B39,B98,C69

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057763658.1

739 aa

370

739

NB-ARC

WHD_DRP

LRR_14

PF00931 NB-ARC 51-214 aa PF23559 WHD_DRP 299-368 aa PF23598 LRR_14 414-683 aa

XP_057763659.1

739 aa

370

739

NB-ARC

WHD_DRP

LRR_14

PF00931 NB-ARC 51-214 aa PF23559 WHD_DRP 299-368 aa PF23598 LRR_14 414-683 aa

XP_057763660.1

739 aa

370

739

NB-ARC

WHD_DRP

LRR_14

PF00931 NB-ARC 51-214 aa PF23559 WHD_DRP 299-368 aa PF23598 LRR_14 414-683 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057763658.1`	Pfam	`PF00931`	NB-ARC	Domain	51	214	5e-42	144.1	NB-ARC domain
`XP_057763658.1`	Pfam	`PF23559`	WHD_DRP	Domain	299	368	2.7e-19	69.7	Disease resistance protein Winged helix domain
`XP_057763658.1`	Pfam	`PF23598`	LRR_14	Repeat	414	683	9.5e-11	41.8	Leucine-rich repeat region
`XP_057763659.1`	Pfam	`PF00931`	NB-ARC	Domain	51	214	5e-42	144.1	NB-ARC domain
`XP_057763659.1`	Pfam	`PF23559`	WHD_DRP	Domain	299	368	2.7e-19	69.7	Disease resistance protein Winged helix domain
`XP_057763659.1`	Pfam	`PF23598`	LRR_14	Repeat	414	683	9.5e-11	41.8	Leucine-rich repeat region
`XP_057763660.1`	Pfam	`PF00931`	NB-ARC	Domain	51	214	5e-42	144.1	NB-ARC domain
`XP_057763660.1`	Pfam	`PF23559`	WHD_DRP	Domain	299	368	2.7e-19	69.7	Disease resistance protein Winged helix domain
`XP_057763660.1`	Pfam	`PF23598`	LRR_14	Repeat	414	683	9.5e-11	41.8	Leucine-rich repeat region

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057907676.1
CTAATTCACACTAATCAATGCTAGCTGTGAATTGACAGCTCAAAAAGAAAAAAGTTTCCACTAATTGAGTTATACAGCATATTGAATTGAATTTATTGTTAGATTTTGAGAATAAAGAATCACAGTCTCATCTTCTTCCTTCACAACTCCGAAGCAATAGTACAAGCCATGGCAGCAGCTTATGCAGCTCTGGTTTCTGCTATGCATATCATAAACAACCTTCACCATCATCCTCGCCCTCCTATTTCTCTCCACATTCA...

XM_057907675.1
CTAATTCACACTAATCAATGCTAGCTGTGAATTGACAGCTCAAAAAGAAAAAAGTTTCCACTAATTGAGTTATACAGCATATTGAATTGAATTTATTGTTAGATTTTGAGAATAAAGAATCACAGTCTCATCTTCTTCCTTCACAACTCCGAAGCAATAGTACAAGCCATGGCAGCAGCTTATGCAGCTCTGGTTTCTGCTATGCATATCATAAACAACCTTCACCATCATCCTCGCCCTCCTATTTCTCTCCACATTCA...

CDS

3 records

下载 CDS FASTA

LOC130984971
ATGGCTTCGATCGAAGAGGAAGCCAAGCAAATTCAAGGGAGAGTTGGAGTCCAACATCAGCTGCACACAAAGTCAACGCCTTCGGATTCGTCGAGATCTTCTTCGATTCCGCAGCAGAGTAGCATGGTGGGTGCTGATGATGTCAAGCTTCAAATGATGGATAAGCTCACTTCTGATAGCCTTCATCTACAGATCATTCCCATTGTAGGGATGGGCGGCTCCGGTAAGACCACTCTTGCTAGAACTGTTTATGAAGAACG...

Protein

3 records

下载 Protein FASTA

XP_057763658.1
MASIEEEAKQIQGRVGVQHQLHTKSTPSDSSRSSSIPQQSSMVGADDVKLQMMDKLTSDSLHLQIIPIVGMGGSGKTTLARTVYEERLIKEHFDICAWATISQEYVIREIFAAVLRQLNIKVDDDLNEHELGEKLYKHLYGRRYLIIMDDMWSIDAWDRVRNYFPDSKNRSRLVVTTRLSALASKLPNSDSLGMKLLDEAESWELLSKTVFREEGCPLELEEIGKKIGKSCKGLPLSIVVVGGLLAKSKHERECWEEIGE...

XP_057763659.1
MASIEEEAKQIQGRVGVQHQLHTKSTPSDSSRSSSIPQQSSMVGADDVKLQMMDKLTSDSLHLQIIPIVGMGGSGKTTLARTVYEERLIKEHFDICAWATISQEYVIREIFAAVLRQLNIKVDDDLNEHELGEKLYKHLYGRRYLIIMDDMWSIDAWDRVRNYFPDSKNRSRLVVTTRLSALASKLPNSDSLGMKLLDEAESWELLSKTVFREEGCPLELEEIGKKIGKSCKGLPLSIVVVGGLLAKSKHERECWEEIGE...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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