当前解析结果
SmilChr01G002600| 统一新 Gene ID | SmilChr01G002600 |
|---|---|
| 名称 | SmilChr01G002600 |
| 描述 | uncharacterized SmilChr01G002600 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 44170440 - 44174829 / - |
| NCBI Gene ID | LOC130985007 |
|---|---|
| GeneID | 130985007 |
| locus_tag | - |
| NCBI Name | LOC130985007 |
| 原始查询 | LOC130985007 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:828401]; symbol=TRM11; hit=AT4G23020; species=arabidopsis; confidence=low |
| 产物 | uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:828401]; symbol=TRM11; hit=AT4G23020; species=arabidopsis; confidence=low |
| Arabidopsis | AT4G23020 (TRM11)uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:828401] identity=30.5; qcov=1.07; evalue=3.08e-38; confidence=low |
| Rice | Os04g0572500- identity=23.2; qcov=1.04; evalue=3.02e-08; confidence=weak |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130985007 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057763718.1 |
| 2 | Cytoplasm | 细胞质 | 0.80000 | XP_057763718.1 |
| 3 | Cytosol | 细胞质基质 | 0.20000 | XP_057763718.1 |
| 4 | Cell membrane | 细胞膜 | 0.20000 | XP_057763718.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057763718.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:44170887 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr1:44171049 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B97,C38 |
Chr1:44171082 |
C |
CTT |
2bp_insertion | frameshift_variant | 22 | A14,A15,A23,A6,B103,B114,B135,B20,B24,B3,B44,B59,B6,B65,B69,C13,C20,C21,C3,C51,C74,C75 |
Chr1:44171083 |
C |
CA |
1bp_insertion | frameshift_variant | 16 | A14,A23,A6,B103,B20,B24,B44,B59,B6,B65,B69,C13,C20,C3,C74,C75 |
Chr1:44171549 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C1,C17 |
Chr1:44171573 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B97,C38 |
Chr1:44174001 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr1:44174208 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B104,B105,B75 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。