Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G000293`

染色体: Chr05 坐标: 2235090-2237980 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G000293`
名称	SmilChr05G000293
描述	trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1-like
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	2235090 - 2237980 / `+`

ID 对照

NCBI Gene ID	`LOC130985017`
GeneID	`130985017`
locus_tag	`-`
NCBI Name	`LOC130985017`
原始查询	`LOC130985017`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1-like
产物	trifunctional UDP-glucose 4%2C6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3%2C5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1-like
Arabidopsis	`AT1G78570` (RHM1) rhamnose biosynthesis 1 [Source:NCBI gene (formerly Entrezgene);Acc:844193] identity=77.8; qcov=0.99; evalue=6.89e-170; confidence=high
Rice	`Os03g0278200` - identity=78.5; qcov=0.99; evalue=9.88e-172; confidence=high
GO	GO:0008460 (dTDP-glucose 4,6-dehydratase activity); GO:0010253 (UDP-rhamnose biosynthetic process); GO:0010280 (UDP-L-rhamnose synthase activity); GO:0010315 (auxin export across the plasma membrane); GO:0050377 (UDP-glucose 4,6-dehydratase activity); GO:0051555 (flavonol biosynthetic process)
KEGG	-
Pfam	PF01073 (3Beta_HSD); PF01370 (Epimerase); PF02719 (Polysacc_synt_2); PF04321 (RmlD_sub_bind); PF07993 (NAD_binding_4); PF16363 (GDP_Man_Dehyd)
InterPro	-
eggNOG	-
NR	GeneID:130985017

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057763739.1`
2	Nucleus	细胞核	0.60000	`XP_057763739.1`
3	Cytosol	细胞质基质	0.60000	`XP_057763739.1`
4	Peroxisome	过氧化物酶体	0.40000	`XP_057763736.1`
5	Endoplasmic reticulum	内质网	0.20000	`XP_057763736.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:2236171`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B112,C26,C47
`Chr5:2236188`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C9
`Chr5:2236194`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B112,B82,C26,C47
`Chr5:2236220`	`CT`	`C`	1bp_deletion	frameshift_variant	2	B112,C26
`Chr5:2236220`	`CT`	`C`	1bp_deletion	CDS_variant	2	B112,C26
`Chr5:2236224`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B112,C26
`Chr5:2236227`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B112,C26
`Chr5:2236243`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B112,C26
`Chr5:2236253`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B112,C26
`Chr5:2236284`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B109,B112
`Chr5:2236338`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B11,C24,C72,D6
`Chr5:2236365`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B104,C33,C42

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057763736.1

383 aa

192

383

RmlD_sub_bind

Epimerase

Polysacc_synt_2

GDP_Man_Dehyd

3Beta_HSD

NAD_binding_4

PF04321 RmlD_sub_bind 8-317 aa PF01370 Epimerase 9-251 aa PF02719 Polysacc_synt_2 9-280 aa PF16363 GDP_Man_Dehyd 10-315 aa PF01073 3Beta_HSD 11-234 aa PF07993 NAD_binding_4 12-193 aa

XP_057763737.1

383 aa

192

383

RmlD_sub_bind

Epimerase

Polysacc_synt_2

GDP_Man_Dehyd

3Beta_HSD

NAD_binding_4

PF04321 RmlD_sub_bind 8-317 aa PF01370 Epimerase 9-251 aa PF02719 Polysacc_synt_2 9-280 aa PF16363 GDP_Man_Dehyd 10-315 aa PF01073 3Beta_HSD 11-234 aa PF07993 NAD_binding_4 12-193 aa

XP_057763738.1

383 aa

192

383

RmlD_sub_bind

Epimerase

Polysacc_synt_2

GDP_Man_Dehyd

3Beta_HSD

NAD_binding_4

PF04321 RmlD_sub_bind 8-317 aa PF01370 Epimerase 9-251 aa PF02719 Polysacc_synt_2 9-280 aa PF16363 GDP_Man_Dehyd 10-315 aa PF01073 3Beta_HSD 11-234 aa PF07993 NAD_binding_4 12-193 aa

XP_057763739.1

291 aa

146

291

RmlD_sub_bind

Epimerase

Polysacc_synt_2

GDP_Man_Dehyd

3Beta_HSD

NAD_binding_4

PF04321 RmlD_sub_bind 8-274 aa PF01370 Epimerase 9-251 aa PF02719 Polysacc_synt_2 9-279 aa PF16363 GDP_Man_Dehyd 10-266 aa PF01073 3Beta_HSD 11-234 aa PF07993 NAD_binding_4 12-193 aa

XP_057763740.1

291 aa

146

291

RmlD_sub_bind

Epimerase

Polysacc_synt_2

GDP_Man_Dehyd

3Beta_HSD

NAD_binding_4

PF04321 RmlD_sub_bind 8-274 aa PF01370 Epimerase 9-251 aa PF02719 Polysacc_synt_2 9-279 aa PF16363 GDP_Man_Dehyd 10-266 aa PF01073 3Beta_HSD 11-234 aa PF07993 NAD_binding_4 12-193 aa

XP_057763743.1

291 aa

146

291

RmlD_sub_bind

Epimerase

Polysacc_synt_2

GDP_Man_Dehyd

3Beta_HSD

NAD_binding_4

PF04321 RmlD_sub_bind 8-274 aa PF01370 Epimerase 9-251 aa PF02719 Polysacc_synt_2 9-279 aa PF16363 GDP_Man_Dehyd 10-266 aa PF01073 3Beta_HSD 11-234 aa PF07993 NAD_binding_4 12-193 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057763736.1`	Pfam	`PF04321`	RmlD_sub_bind	Domain	8	317	5.2e-17	62.6	RmlD substrate binding domain
`XP_057763736.1`	Pfam	`PF01370`	Epimerase	Family	9	251	1.2e-59	202.3	NAD dependent epimerase/dehydratase family
`XP_057763736.1`	Pfam	`PF02719`	Polysacc_synt_2	Family	9	280	1.4e-21	77.7	Polysaccharide biosynthesis protein
`XP_057763736.1`	Pfam	`PF16363`	GDP_Man_Dehyd	Domain	10	315	6.8e-69	233.6	GDP-mannose 4,6 dehydratase
`XP_057763736.1`	Pfam	`PF01073`	3Beta_HSD	Family	11	234	4.2e-25	89.0	3-beta hydroxysteroid dehydrogenase/isomerase family
`XP_057763736.1`	Pfam	`PF07993`	NAD_binding_4	Family	12	193	1.7e-18	67.4	Male sterility protein
`XP_057763737.1`	Pfam	`PF04321`	RmlD_sub_bind	Domain	8	317	5.2e-17	62.6	RmlD substrate binding domain
`XP_057763737.1`	Pfam	`PF01370`	Epimerase	Family	9	251	1.2e-59	202.3	NAD dependent epimerase/dehydratase family
`XP_057763737.1`	Pfam	`PF02719`	Polysacc_synt_2	Family	9	280	1.4e-21	77.7	Polysaccharide biosynthesis protein
`XP_057763737.1`	Pfam	`PF16363`	GDP_Man_Dehyd	Domain	10	315	6.8e-69	233.6	GDP-mannose 4,6 dehydratase
`XP_057763737.1`	Pfam	`PF01073`	3Beta_HSD	Family	11	234	4.2e-25	89.0	3-beta hydroxysteroid dehydrogenase/isomerase family
`XP_057763737.1`	Pfam	`PF07993`	NAD_binding_4	Family	12	193	1.7e-18	67.4	Male sterility protein
`XP_057763738.1`	Pfam	`PF04321`	RmlD_sub_bind	Domain	8	317	5.2e-17	62.6	RmlD substrate binding domain
`XP_057763738.1`	Pfam	`PF01370`	Epimerase	Family	9	251	1.2e-59	202.3	NAD dependent epimerase/dehydratase family
`XP_057763738.1`	Pfam	`PF02719`	Polysacc_synt_2	Family	9	280	1.4e-21	77.7	Polysaccharide biosynthesis protein
`XP_057763738.1`	Pfam	`PF16363`	GDP_Man_Dehyd	Domain	10	315	6.8e-69	233.6	GDP-mannose 4,6 dehydratase
`XP_057763738.1`	Pfam	`PF01073`	3Beta_HSD	Family	11	234	4.2e-25	89.0	3-beta hydroxysteroid dehydrogenase/isomerase family
`XP_057763738.1`	Pfam	`PF07993`	NAD_binding_4	Family	12	193	1.7e-18	67.4	Male sterility protein
`XP_057763739.1`	Pfam	`PF04321`	RmlD_sub_bind	Domain	8	274	1.4e-15	57.9	RmlD substrate binding domain
`XP_057763739.1`	Pfam	`PF01370`	Epimerase	Family	9	251	5.5e-60	203.5	NAD dependent epimerase/dehydratase family
`XP_057763739.1`	Pfam	`PF02719`	Polysacc_synt_2	Family	9	279	4.7e-22	79.2	Polysaccharide biosynthesis protein
`XP_057763739.1`	Pfam	`PF16363`	GDP_Man_Dehyd	Domain	10	266	1.1e-62	213.2	GDP-mannose 4,6 dehydratase
`XP_057763739.1`	Pfam	`PF01073`	3Beta_HSD	Family	11	234	1.9e-25	90.2	3-beta hydroxysteroid dehydrogenase/isomerase family
`XP_057763739.1`	Pfam	`PF07993`	NAD_binding_4	Family	12	193	6.7e-19	68.8	Male sterility protein
`XP_057763740.1`	Pfam	`PF04321`	RmlD_sub_bind	Domain	8	274	1.4e-15	57.9	RmlD substrate binding domain
`XP_057763740.1`	Pfam	`PF01370`	Epimerase	Family	9	251	5.5e-60	203.5	NAD dependent epimerase/dehydratase family
`XP_057763740.1`	Pfam	`PF02719`	Polysacc_synt_2	Family	9	279	4.7e-22	79.2	Polysaccharide biosynthesis protein
`XP_057763740.1`	Pfam	`PF16363`	GDP_Man_Dehyd	Domain	10	266	1.1e-62	213.2	GDP-mannose 4,6 dehydratase
`XP_057763740.1`	Pfam	`PF01073`	3Beta_HSD	Family	11	234	1.9e-25	90.2	3-beta hydroxysteroid dehydrogenase/isomerase family
`XP_057763740.1`	Pfam	`PF07993`	NAD_binding_4	Family	12	193	6.7e-19	68.8	Male sterility protein
`XP_057763743.1`	Pfam	`PF04321`	RmlD_sub_bind	Domain	8	274	1.4e-15	57.9	RmlD substrate binding domain
`XP_057763743.1`	Pfam	`PF01370`	Epimerase	Family	9	251	5.5e-60	203.5	NAD dependent epimerase/dehydratase family
`XP_057763743.1`	Pfam	`PF02719`	Polysacc_synt_2	Family	9	279	4.7e-22	79.2	Polysaccharide biosynthesis protein
`XP_057763743.1`	Pfam	`PF16363`	GDP_Man_Dehyd	Domain	10	266	1.1e-62	213.2	GDP-mannose 4,6 dehydratase
`XP_057763743.1`	Pfam	`PF01073`	3Beta_HSD	Family	11	234	1.9e-25	90.2	3-beta hydroxysteroid dehydrogenase/isomerase family
`XP_057763743.1`	Pfam	`PF07993`	NAD_binding_4	Family	12	193	6.7e-19	68.8	Male sterility protein

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

6 records

下载 cDNA FASTA

XM_057907754.1
CTTCCCTGATTTGATTTCAAACCAAATTGTTTTCACCTAAAAAAAAAACAAATTGTTTTCTCTCTTTTTTTAAAAATATCATAATTATATGTGGGATCATTTTAATTACGTTGCATCCCACATAAATTTTGATGAAAAATGAAGCTCTTCTGATTTTTTGATGATTCGAGCTTGCTGATTTTCAGGTAAATTGGATCGAACTCCGAGATTCTTCTTTGATCCAACAGATTCTTACTTTTTTCGCATGTGAAAAATCTTAC...

XM_057907760.1
TCCCTGATTTGATTTCAAACCAAATTGTTTTCACCTAAAAAAAAAACAAATTGTTTTCTCTCTTTTTTTAAAAATATCATAATTATATGTGGGATCATTTTAATTACGTTGCATCCCACATAAATTTTGATGAAAAATGAAGCTCTTCTGATTTTTTGATGATTCGAGCTTGCTGATTTTCAGGTAAATTGGATCGAACTCCGAGATTCTTCTTTGATCCAACAGATTCTTACTTTTTTCGCATGTGAAAAATCTTACAT...

CDS

6 records

下载 CDS FASTA

LOC130985017
ATGGAAAAATATGGAGCAAAGAATATCTTGATGACTGGTGGTGCTGGTTTCATAGGCTCCCATGTTGCAAACTGGCTGACACGAAGCTACTCCGAGTACAAGATTGTTGTTGTGGATAAGCTGGATTACTGCTCGAACTTGAGGAACCTCGAGCCCTCTCAATCTCTCCCTAACTTCAAATTTGTGAAAGGCGATGTTTGCAGTGCTGATCTCATGTATTTCATACTTGCTACGGAGGCCATAGACACGGTCATGCACTT...

Protein

6 records

下载 Protein FASTA

XP_057763736.1
MEKYGAKNILMTGGAGFIGSHVANWLTRSYSEYKIVVVDKLDYCSNLRNLEPSQSLPNFKFVKGDVCSADLMYFILATEAIDTVMHFAAQTHVDNSFGNSLEFIRNNVYGTCVLLEACKAFGHVKRFVHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSASKAGAEMLVMAYGRSYGLPVIITRGNNVYGPHQYPEKLVPKFILLAMKGQPLPIHGDGSNVRSYLYCEDVAEAFDIILHRGEVGHIYNIGTQEEKSVID...

XP_057763737.1
MEKYGAKNILMTGGAGFIGSHVANWLTRSYSEYKIVVVDKLDYCSNLRNLEPSQSLPNFKFVKGDVCSADLMYFILATEAIDTVMHFAAQTHVDNSFGNSLEFIRNNVYGTCVLLEACKAFGHVKRFVHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSASKAGAEMLVMAYGRSYGLPVIITRGNNVYGPHQYPEKLVPKFILLAMKGQPLPIHGDGSNVRSYLYCEDVAEAFDIILHRGEVGHIYNIGTQEEKSVID...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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