Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G000297`

染色体: Chr05 坐标: 2273602-2277486 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G000297`
名称	SmilChr05G000297
描述	zinc finger BED domain-containing protein RICESLEEPER 1-like
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	2273602 - 2277486 / `-`

ID 对照

NCBI Gene ID	`LOC130985021`
GeneID	`130985021`
locus_tag	`-`
NCBI Name	`LOC130985021`
原始查询	`LOC130985021`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	zinc finger BED domain-containing protein RICESLEEPER 1-like
产物	zinc finger BED domain-containing protein RICESLEEPER 1-like
Arabidopsis	`AT3G42170` (DAYSLEEPER) BED zinc finger and hAT dimerization domain-containing protein DAYSLEEPER [Source:NCBI gene (formerly Entrezgene);Acc:3769417] identity=32.7; qcov=0.976; evalue=1.01e-127; confidence=low
Rice	`Os03g0733400` - identity=36.3; qcov=0.989; evalue=5.8e-137; confidence=medium
GO	GO:0003677 (DNA binding); GO:0046983 (protein dimerization activity)
KEGG	-
Pfam	PF02892 (zf-BED); PF05699 (Dimer_Tnp_hAT); PF14372 (hAT-like_RNase-H); PF27039 (ZBED1_RNase-like_helical); PF27041 (ZBED1_RNase-like)
InterPro	-
eggNOG	-
NR	GeneID:130985021

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057763748.1`
2	Chromosome	染色体	0.00000	`XP_057763748.1`
3	Centromere	着丝粒	0.00000	`XP_057763748.1`
4	Chromatin	染色质	0.00000	`XP_057763748.1`
5	Telomere	端粒	0.00000	`XP_057763748.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:2274893`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C6
`Chr5:2275023`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B76
`Chr5:2275095`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B78
`Chr5:2275214`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B27
`Chr5:2275492`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B22,B82,B91,D2
`Chr5:2275501`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B78
`Chr5:2275572`	`G`	`GT`	1bp_insertion	frameshift_variant	1	C4
`Chr5:2275572`	`G`	`GT`	1bp_insertion	CDS_variant	1	C4
`Chr5:2275696`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B64,C74
`Chr5:2275712`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B46,C33,C78
`Chr5:2275880`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B85
`Chr5:2275924`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B64,C74

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057763748.1

665 aa

332

665

zf-BED

ZBED1_RNase-like

ZBED1_RNase-like_helical

hAT-like_RNase-H

Dimer_Tnp_hAT

PF02892 zf-BED 17-64 aa PF27041 ZBED1_RNase-like 200-295 aa PF27039 ZBED1_RNase-like_helical 298-407 aa PF14372 hAT-like_RNase-H 428-517 aa PF05699 Dimer_Tnp_hAT 564-646 aa

XP_057763749.1

665 aa

332

665

zf-BED

ZBED1_RNase-like

ZBED1_RNase-like_helical

hAT-like_RNase-H

Dimer_Tnp_hAT

PF02892 zf-BED 17-64 aa PF27041 ZBED1_RNase-like 200-295 aa PF27039 ZBED1_RNase-like_helical 298-407 aa PF14372 hAT-like_RNase-H 428-517 aa PF05699 Dimer_Tnp_hAT 564-646 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057763748.1`	Pfam	`PF02892`	zf-BED	Domain	17	64	6e-08	33.3	BED zinc finger
`XP_057763748.1`	Pfam	`PF27041`	ZBED1_RNase-like	Domain	200	295	3e-27	95.3	ZBED1 RNase-like domain
`XP_057763748.1`	Pfam	`PF27039`	ZBED1_RNase-like_helical	Domain	298	407	2.2e-32	112.1	ZBED1 RNase-like helical domain
`XP_057763748.1`	Pfam	`PF14372`	hAT-like_RNase-H	Domain	428	517	1.8e-34	118.6	hAT-like transposase, RNase-H fold
`XP_057763748.1`	Pfam	`PF05699`	Dimer_Tnp_hAT	Domain	564	646	2.2e-25	89.0	hAT family C-terminal dimerisation region
`XP_057763749.1`	Pfam	`PF02892`	zf-BED	Domain	17	64	6e-08	33.3	BED zinc finger
`XP_057763749.1`	Pfam	`PF27041`	ZBED1_RNase-like	Domain	200	295	3e-27	95.3	ZBED1 RNase-like domain
`XP_057763749.1`	Pfam	`PF27039`	ZBED1_RNase-like_helical	Domain	298	407	2.2e-32	112.1	ZBED1 RNase-like helical domain
`XP_057763749.1`	Pfam	`PF14372`	hAT-like_RNase-H	Domain	428	517	1.8e-34	118.6	hAT-like transposase, RNase-H fold
`XP_057763749.1`	Pfam	`PF05699`	Dimer_Tnp_hAT	Domain	564	646	2.2e-25	89.0	hAT family C-terminal dimerisation region

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XR_009088852.1
GTCACGTATAATAGAATTTCTTAAGAAAATATTAGAAAATGGCTTCGCAAATCCAAATCCACAGCCGCGGCCCAATACGAAGCCCATTTAGGTAGCGGGTTGTCACAATCGCTTCAAATTAGCTCAATTTTTCCGATTATCCCTTCCACTTTTCACCTTCACAGAAGAAATTGATTCCTTGCCTCACACGCGCAGCACACAGAGGCCTTCTCCCAGAATCAATGCAACGCCATACCTGCTGCACATAATTCTTATTCGAA...

XR_009088853.1
GTCACGTATAATAGAATTTCTTAAGAAAATATTAGAAAATGGCTTCGCAAATCCAAATCCACAGCCGCGGCCCAATACGAAGCCCATTTAGGTAGCGGGTTGTCACAATCGCTTCAAATTAGCTCAATTTTTCCGATTATCCCTTCCACTTTTCACCTTCACAGAAGAAATTGATTCCTTGCCTCACACGCGCAGCACACAGAGGCCTTCTCCCAGAATCAATGCAACGCCATACCTGCTGCACATAATTCTTATTCGAA...

CDS

2 records

下载 CDS FASTA

LOC130985021
ATGGAGATCACAGAAGAGGCAGTGATTGTGAATTCTAGTAGATTGAAATCTGTTGTATGGAATGACTTCGACAGAGTTAAAAAAGGTGAAACTTTTGCGGCTATCTGCCGGCATTGTAAAAGAATACTCAGCGGGTCGAGTACCAGTGGAACATCTCACTTGAGAAATCATCTGATCAGGTGTCGTAGGCGTTCGAACCATGATATAAGTCAGTTGTTGACGAGGGGAAAGAGGAAGCAGAGCGCCGTTGCCATTTCCAA...

Protein

2 records

下载 Protein FASTA

XP_057763748.1
MEITEEAVIVNSSRLKSVVWNDFDRVKKGETFAAICRHCKRILSGSSTSGTSHLRNHLIRCRRRSNHDISQLLTRGKRKQSAVAISNFSYNQSAAKNEMVTVASVNFEQGVKVRNTNGGSLHFDQRRSQLDLARMIIMHGYPLGMVEDVGFKTFLQNLQPLFDFVTVNGIEADCIEIYKKEKQRVYEELDKLPGKVSLSADRWATNGGSEYLCLIAHYVDDSWELKKKILNFLSVDPSQAEDMLSELIMTSLRNWDIDRK...

XP_057763749.1
MEITEEAVIVNSSRLKSVVWNDFDRVKKGETFAAICRHCKRILSGSSTSGTSHLRNHLIRCRRRSNHDISQLLTRGKRKQSAVAISNFSYNQSAAKNEMVTVASVNFEQGVKVRNTNGGSLHFDQRRSQLDLARMIIMHGYPLGMVEDVGFKTFLQNLQPLFDFVTVNGIEADCIEIYKKEKQRVYEELDKLPGKVSLSADRWATNGGSEYLCLIAHYVDDSWELKKKILNFLSVDPSQAEDMLSELIMTSLRNWDIDRK...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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