当前解析结果
SmilChr05G000392| 统一新 Gene ID | SmilChr05G000392 |
|---|---|
| 名称 | SmilChr05G000392 |
| 描述 | uncharacterized SmilChr05G000392 |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 2955293 - 2956192 / + |
| NCBI Gene ID | LOC130985110 |
|---|---|
| GeneID | 130985110 |
| locus_tag | - |
| NCBI Name | LOC130985110 |
| 原始查询 | LOC130985110 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:828262]; symbol=AT4G21740; hit=AT4G21740; species=arabidopsis; confidence=low |
| 产物 | uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:828262]; symbol=AT4G21740; hit=AT4G21740; species=arabidopsis; confidence=low |
| Arabidopsis | AT4G21740 (AT4G21740)uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:828262] identity=35.7; qcov=0.881; evalue=9.5e-13; confidence=low |
| Rice | -- |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130985110 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057763870.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057763870.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057763870.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057763870.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057763870.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:2955639 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A9,B111,C17,C19,C86 |
Chr5:2955652 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A9,B111,C17,C19,C86 |
Chr5:2955687 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B57,C25 |
Chr5:2955692 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B10,B33,B44,C8 |
Chr5:2955696 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B1 |
Chr5:2955833 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B12,B2,B55,C84 |
Chr5:2955870 |
ATC |
A |
2bp_deletion | frameshift_variant | 49 | A13,A14,A23,B103,B105,B109,B11,B111,B112,B119,B128,B130,B135,B137,B17,B2,B20,B23,B3,B33,B47,B5,B53,B65,B66,B67,B69,B78,B81,B85,B86,B89,C1,C16,C21,C28,C30,C31,C42,C44,C45,C68,C69,C70,C73,C8,C81,D1,D2 |
Chr5:2955879 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A20 |
Chr5:2955925 |
TAC |
T |
2bp_deletion | frameshift_variant | 20 | A11,A21,A4,A7,B107,B123,B24,B27,B28,B31,B38,B57,B62,B68,B70,B83,C18,C33,C65,C66 |
Chr5:2955929 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B7,C60 |
Chr5:2955937 |
C |
CAT |
2bp_insertion | frameshift_variant | 20 | A11,A21,A4,A7,B107,B123,B131,B24,B28,B38,B57,B62,B68,B70,B83,C18,C33,C60,C65,C66 |
Chr5:2955954 |
AC |
A |
1bp_deletion | frameshift_variant | 1 | B113 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。