Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G000399`

染色体: Chr05 坐标: 2999280-3007173 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G000399`
名称	SmilChr05G000399
描述	uncharacterized SmilChr05G000399
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	2999280 - 3007173 / `+`

ID 对照

NCBI Gene ID	`LOC130985117`
GeneID	`130985117`
locus_tag	`-`
NCBI Name	`LOC130985117`
原始查询	`LOC130985117`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	SIT4 phosphatase-associated family protein [Source:NCBI gene (formerly Entrezgene);Acc:839926]; symbol=AT1G30470; hit=AT1G30470; species=arabidopsis; confidence=high
产物	SIT4 phosphatase-associated family protein [Source:NCBI gene (formerly Entrezgene);Acc:839926]; symbol=AT1G30470; hit=AT1G30470; species=arabidopsis; confidence=high
Arabidopsis	`AT1G30470` (AT1G30470) SIT4 phosphatase-associated family protein [Source:NCBI gene (formerly Entrezgene);Acc:839926] identity=67.2; qcov=0.934; evalue=0; confidence=high
Rice	`Os05g0592500` - identity=72.1; qcov=0.794; evalue=0; confidence=high
GO	GO:0019888 (protein phosphatase regulator activity); GO:0019903 (protein phosphatase binding); GO:0043666 (GO:0043666)
KEGG	-
Pfam	PF04499 (SAPS)
InterPro	-
eggNOG	-
NR	GeneID:130985117

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	1.00000	`XP_057763885.1`
2	Cytoplasm	细胞质	0.80000	`XP_057763885.1`
3	Nucleus	细胞核	0.40000	`XP_057763885.1`
4	Chromosome	染色体	0.00000	`XP_057763885.1`
5	Centromere	着丝粒	0.00000	`XP_057763885.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:3000839`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B129
`Chr5:3001582`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B133,B25
`Chr5:3001761`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B20,B51
`Chr5:3001764`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C27
`Chr5:3003227`	`TTG`	`T`	2bp_deletion	frameshift_variant	131	A11,A13,A14,A16,A19,A2,A20,A21,A25,A3,A5,A7,A8,A9,B101,B102,B104,B106,B108,B11,B112,B117,B118,B119,B120,B121,B122,B123,B124,B125,B127,B128,B13,B130,B131,B132,B135,B136,B140,B17,B2,B20,B22,B23,B24,B27,B28,B31,B32,B33,B34,B35,B4,B41,B43,B45,B46,B5,B50,B51,B52,B53,B57,B58,B60,B63,B65,B68,B7,B73,B74,B78,B80,B81,B82,B84,B86,B87,B89,B9,B91,B95,B97,B99,C1,C12,C13,C15,C17,C18,C19,C25,C27,C31,C33,C34,C35,C36,C37,C39,C4,C41,C45,C46,C48,C49,C5,C50,C51,C52,C60,C62,C7,C71,C73,C74,C78,C80,C82,C85,C86,C87,D11,D2,D3,D4,D5,D6,D7,D8,D9
`Chr5:3003233`	`A`	`ACC`	2bp_insertion	frameshift_variant	131	A11,A13,A14,A16,A19,A2,A20,A21,A25,A3,A5,A7,A8,A9,B101,B102,B104,B106,B108,B11,B112,B117,B118,B119,B120,B121,B122,B123,B124,B125,B127,B128,B13,B130,B131,B132,B135,B136,B140,B17,B2,B20,B22,B23,B24,B27,B28,B31,B32,B33,B34,B35,B4,B41,B43,B45,B46,B5,B50,B51,B52,B53,B57,B58,B60,B63,B65,B68,B7,B73,B74,B78,B80,B81,B82,B84,B86,B87,B89,B9,B91,B95,B97,B99,C1,C12,C13,C15,C17,C18,C19,C25,C27,C31,C33,C34,C35,C36,C37,C39,C4,C41,C45,C46,C48,C49,C5,C50,C51,C52,C60,C62,C7,C71,C73,C74,C78,C80,C82,C85,C86,C87,D11,D2,D3,D4,D5,D6,D7,D8,D9
`Chr5:3003275`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B53,B95,C71,D9
`Chr5:3003501`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A3,B118,B5,C44,C59
`Chr5:3003772`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A23,B64
`Chr5:3003776`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B30,C72
`Chr5:3003788`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B30,C72
`Chr5:3004265`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A10,B126,B137,B3,B99

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057763885.1

768 aa

384

768

SAPS

PF04499 SAPS 131-489 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057763885.1`	Pfam	`PF04499`	SAPS	Family	131	489	2.9e-67	228.3	SIT4 phosphatase-associated protein

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057907902.1
ATAAAATAAGTCAAGAAATACACATGTGGTAATAATAATAAACACATACAAAAATCAAAACTATTGAACAACGGATATTTATTTCCGTTTTGATGGGTTGGTTTATTGATACTATATTTTTTCTGTAAATTCAGAAAATTTTCTCAATTTTTCTCCCACACACACACACCCGCAGGGATTTTATTGAATCAAAGATTGTGATTGGGAGTCTTAGCGTGGGCGCTGGGTGTATGAGCTAGGGTTTTGAGTGGACAGATCTG...

CDS

1 records

下载 CDS FASTA

LOC130985117
ATGTTCTGGCGCATGGCTGGTCTCTCCACTGCATCCCCAGTGGAGACCATCTTGGATAAAGATGATTTTACACTGGAGGAGCTATTGGATGAGGATGAAATCATTCAGGAATGCAAAGCTCTTAATGGCCGTCTCATTAATTTTTTGCGGGAAAGAGCTAAAGTAAAACAACTGGTTCAATACATTGTGGAAGAACCTCCAGAAGGTGCCGAAAAAGAACGAACATTCAAGTTTCCTTTTGTTGCTTGTGAGATTTTCAC...

Protein

1 records

下载 Protein FASTA

XP_057763885.1
MFWRMAGLSTASPVETILDKDDFTLEELLDEDEIIQECKALNGRLINFLRERAKVKQLVQYIVEEPPEGAEKERTFKFPFVACEIFTCEVDIILKALIEDEELMDLLFSFLEPERPHSTLLAGYFSKVVVCLLLRKTTPLMNYIRAHQDIIRRLVDLIGITSIMEVLIRLIGADEHIYTNCADSMQWLEDMNVLEMIVDKFSSSDCPEVHANAAETLCAITRYAPPGLSSKISSPSFIERLFRHALEDSRPKSVLVNLLS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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