Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G000402`

染色体: Chr05 坐标: 3034937-3037902 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G000402`
名称	SmilChr05G000402
描述	cationic amino acid transporter 1
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	3034937 - 3037902 / `-`

ID 对照

NCBI Gene ID	`LOC130985122`
GeneID	`130985122`
locus_tag	`-`
NCBI Name	`LOC130985122`
原始查询	`LOC130985122`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	cationic amino acid transporter 1
产物	cationic amino acid transporter 1
Arabidopsis	`AT4G21120` (AAT1) amino acid transporter 1 [Source:NCBI gene (formerly Entrezgene);Acc:827860] identity=72.2; qcov=0.967; evalue=0; confidence=high
Rice	`Os01g0209800` (OsCAT1) - identity=60.5; qcov=0.933; evalue=0; confidence=high
GO	GO:0005313 (L-glutamate transmembrane transporter activity); GO:0005886 (plasma membrane); GO:0006865 (amino acid transport); GO:0015189 (L-lysine transmembrane transporter activity); GO:0055085 (transmembrane transport)
KEGG	-
Pfam	PF00324 (AA_permease); PF13520 (AA_permease_2); PF13906 (AA_permease_C)
InterPro	-
eggNOG	-
NR	GeneID:130985122

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057763894.1`
2	Vacuole	液泡	0.20000	`XP_057763894.1`
3	Vacuole membrane	液泡膜	0.20000	`XP_057763894.1`
4	Nucleus	细胞核	0.00000	`XP_057763894.1`
5	Chromosome	染色体	0.00000	`XP_057763894.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:3035146`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B86,B87
`Chr5:3035163`	`C`	`CGG`	2bp_insertion	frameshift_variant	15	A13,A19,A23,B11,B112,B136,B14,B22,B46,B64,B67,B91,B94,C48,C6
`Chr5:3035172`	`G`	`GTT`	2bp_insertion	frameshift_variant	63	A13,A20,A6,B102,B108,B109,B114,B115,B117,B120,B121,B123,B125,B132,B135,B16,B17,B19,B2,B23,B24,B3,B41,B46,B47,B5,B53,B56,B59,B61,B64,B7,B73,B78,B8,B84,B86,B91,B95,B96,B99,C15,C22,C23,C26,C33,C34,C36,C37,C39,C47,C48,C49,C5,C50,C78,C80,C86,C87,D3,D4,D6,D7
`Chr5:3035505`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B30,B88
`Chr5:3035506`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B89,B99,C62,C87,D11
`Chr5:3035530`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C80
`Chr5:3035548`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B55
`Chr5:3035737`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B1
`Chr5:3035762`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C23
`Chr5:3035775`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A16,A4,B91
`Chr5:3035839`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A10,A2,B76
`Chr5:3035841`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C74

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057763894.1

611 aa

306

611

AA_permease_2

AA_permease

AA_permease_C

PF13520 AA_permease_2 76-451 aa PF00324 AA_permease 81-445 aa PF13906 AA_permease_C 515-565 aa

XP_057763895.1

611 aa

306

611

AA_permease_2

AA_permease

AA_permease_C

PF13520 AA_permease_2 76-451 aa PF00324 AA_permease 81-445 aa PF13906 AA_permease_C 515-565 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057763894.1`	Pfam	`PF13520`	AA_permease_2	Family	76	451	4.9e-50	171.4	Amino acid permease
`XP_057763894.1`	Pfam	`PF00324`	AA_permease	Domain	81	445	7.2e-37	127.9	Amino acid permease
`XP_057763894.1`	Pfam	`PF13906`	AA_permease_C	Domain	515	565	8.4e-18	64.9	C-terminus of AA_permease
`XP_057763895.1`	Pfam	`PF13520`	AA_permease_2	Family	76	451	4.9e-50	171.4	Amino acid permease
`XP_057763895.1`	Pfam	`PF00324`	AA_permease	Domain	81	445	7.2e-37	127.9	Amino acid permease
`XP_057763895.1`	Pfam	`PF13906`	AA_permease_C	Domain	515	565	8.4e-18	64.9	C-terminus of AA_permease

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057907912.1
TTCGTCAAACTCTTCGTATTGCACACACACACAACTCTCTCTCTCTCTCTCTCTCTCTGCATTTCTATTTTCTACACTGCGATCAAAAGTTCAAAATCTTCAGAAATCTCCGATAAAGGCGCTGAGGAAAATATGGAGGGAGACGACAAATCGGAGAGCTCAGGTTTGAGGAAGAGGAGGATGTGCTCGTGCACAAAGGACGATTTTCTCCCTGAAGAATCGTTCAAGAGCTGGGGCAACTACGTGAGTGCATTCAAACA...

XM_057907911.1
TGAGTAATACTAGGCAACGTCGTTGAGTTTTGATGTTGCTGTCATGGATTTCGATTGATCCAATAAACAATTAATCAATTCCTCGTCGTTTTGCATTTGCTTATATATAATACTGCATACACACACGCGATGTAGAATTACTCGAAGTCTAGCTGCTAACGTCAAGCATCTTCCGCCGGTCACTTGACTTTTTCCCAATCGCCGATTTTCCATATAAACAGAGTTATTGAGCGATAGAGAAAGCTGCAATTCTGCTGATT...

CDS

2 records

下载 CDS FASTA

LOC130985122
ATGGAGGGAGACGACAAATCGGAGAGCTCAGGTTTGAGGAAGAGGAGGATGTGCTCGTGCACAAAGGACGATTTTCTCCCTGAAGAATCGTTCAAGAGCTGGGGCAACTACGTGAGTGCATTCAAACAGACTCCGGCCCGGCTGTTGGACCGGGTCACGACCCGGTCGAGCTTGGAGGCCGAGCTGGAGGTCAAGGCTCGCAGTGGTGGCCAGATGAAGAAGACGCTTAATTGGTGGGATTTGATATGGTTTGGCATGGG...

Protein

2 records

下载 Protein FASTA

XP_057763894.1
MEGDDKSESSGLRKRRMCSCTKDDFLPEESFKSWGNYVSAFKQTPARLLDRVTTRSSLEAELEVKARSGGQMKKTLNWWDLIWFGMGAVIGAGIFVLTGQEAHNHAGPAVVLSYAFSGLSALLSVFCYTEFAVEIPVAGGSFAYLRVELGDFVAFIAAGNILLEYIIGGAAVARSWTSYFATLCNHQPEDFRFQVDGLAKDFNQLDPIAVGVIIVICIFAVLSTKGSSRLNYIASVVHMVVIIFIIIAGFIKADTKNYTP...

XP_057763895.1
MEGDDKSESSGLRKRRMCSCTKDDFLPEESFKSWGNYVSAFKQTPARLLDRVTTRSSLEAELEVKARSGGQMKKTLNWWDLIWFGMGAVIGAGIFVLTGQEAHNHAGPAVVLSYAFSGLSALLSVFCYTEFAVEIPVAGGSFAYLRVELGDFVAFIAAGNILLEYIIGGAAVARSWTSYFATLCNHQPEDFRFQVDGLAKDFNQLDPIAVGVIIVICIFAVLSTKGSSRLNYIASVVHMVVIIFIIIAGFIKADTKNYTP...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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