Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G000406`

染色体: Chr05 坐标: 3058966-3063250 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G000406`
名称	SmilChr05G000406
描述	uncharacterized SmilChr05G000406
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	3058966 - 3063250 / `-`

ID 对照

NCBI Gene ID	`LOC130985124`
GeneID	`130985124`
locus_tag	`-`
NCBI Name	`LOC130985124`
原始查询	`LOC130985124`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog
描述	Transducin/WD40 repeat-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:839806]; symbol=AT1G29320; hit=AT1G29320; species=arabidopsis; confidence=high
产物	Transducin/WD40 repeat-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:839806]; symbol=AT1G29320; hit=AT1G29320; species=arabidopsis; confidence=high
Arabidopsis	`AT1G29320` (AT1G29320) Transducin/WD40 repeat-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:839806] identity=60.8; qcov=0.919; evalue=5.7e-161; confidence=high
Rice	`Os07g0506700` - identity=52.4; qcov=0.725; evalue=1.63e-101; confidence=high
GO	GO:0005515 (protein binding); GO:0005730 (nucleolus); GO:0030687 (preribosome, large subunit precursor); GO:0042273 (ribosomal large subunit biogenesis)
KEGG	-
Pfam	-
InterPro	-
eggNOG	-
NR	GeneID:130985124

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057763898.1`
2	Nucleolus	核仁	1.00000	`XP_057763898.1`
3	Chromosome	染色体	0.00000	`XP_057763898.1`
4	Centromere	着丝粒	0.00000	`XP_057763898.1`
5	Chromatin	染色质	0.00000	`XP_057763898.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:3059188`	`T`	`TC`	1bp_insertion	frameshift_variant	1	C45
`Chr5:3059188`	`T`	`TC`	1bp_insertion	CDS_variant	1	C45
`Chr5:3059216`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B104,B41
`Chr5:3059222`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B113,C35
`Chr5:3059272`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B121,B86,B87
`Chr5:3059423`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C26
`Chr5:3059465`	`GTT`	`G`	2bp_deletion	frameshift_variant	2	B113,C35
`Chr5:3059465`	`GTT`	`G`	2bp_deletion	CDS_variant	2	B113,C35
`Chr5:3059785`	`TGA`	`T`	2bp_deletion	frameshift_variant	1	B92
`Chr5:3059785`	`TGA`	`T`	2bp_deletion	CDS_variant	1	B92
`Chr5:3060135`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B14
`Chr5:3060140`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B49

进入 EMS 突变库

预测功能结构域

当前发布数据中，此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057907917.1
TAAAATCCAGACTTCAATGGCGCCCTTCTTCAGTCTCGTCTCTCAGTCTCTCGCGCATCGTTCCTCTCAGCTGAAGCGCCGCAATCTGTCTCTATCATTCTCTCGCTCGTCTCCGGCCTCTCCGCGCCGCCGCAGTAGCAGTGGCATCTGTGTGATAGTAGTTCCCTTGTCTTCTATCAAAGATTAGATGCCGCGTACAACGACGGTCGAGAGTTCCGGCTGCCCTCCACTACGAGCCCTAACCTTTGACGTTCTCGGCC...

XM_057907916.1
TAAAATCCAGACTTCAATGGCGCCCTTCTTCAGTCTCGTCTCTCAGTCTCTCGCGCATCGTTCCTCTCAGCTGAAGCGCCGCAATCTGTCTCTATCATTCTCTCGCTCGTCTCCGGCCTCTCCGCGCCGCCGCAGTAGCAGTGGCATCTGTGTGATAGTAGTTCCCTTGTCTTCTATCAAAGGCAAGCTTCAATCGAGCTGCCCTAAGGTTCACTGGTAAATTTCAGATGGTCCTAGGTGAAGAGCAGCCATGATTTGTG...

CDS

3 records

下载 CDS FASTA

LOC130985124
ATGCCGCGTACAACGACGGTCGAGAGTTCCGGCTGCCCTCCACTACGAGCCCTAACCTTTGACGTTCTCGGCCTTGTCAAAGTTTTGGAGGCACGCGGCGGACAGAATGGAGATGCTGCTAAAGTGGTGGAACGATGGGGTGACCCCGACGCCTCCAAATGTGTGCTTTCAGCTTCAATTCTTGATCGGGAGTCTGACCCGATGGTTGGTATTGCAAGAAAATCTGGATCAGTTGAAGTTATTAGTGCTATAAACGGGGA...

Protein

3 records

下载 Protein FASTA

XP_057763898.1
MPRTTTVESSGCPPLRALTFDVLGLVKVLEARGGQNGDAAKVVERWGDPDASKCVLSASILDRESDPMVGIARKSGSVEVISAINGDLQVQIPDLCQSAVSPEDDSIIGLHLLQKHKSQSSSRSFTLLASTTKGHVRMESVKFGRTPAESVRDPSPTLWNVCESGNILCSKVSEDENHALFGGKGVEVNIWNLHECVKIWTAKSPPKDNLGIFTPTWFTCATFLSKDDHRKFIAGTNSHQVRLYDISAQRRPVISIDFRE...

XP_057763899.1
MPRTTTVESSGCPPLRALTFDVLGLVKVLEARGGQNGDAAKVVERWGDPDASKCVLSASILDRESDPMVGIARKSGSVEVISAINGDLQVQIPDLCQSAVSPEDDSIIGLHLLQKHKSQSSSRSFTLLASTTKGHVRMESVKFGRTPAESVRDPSPTLWNVCESGNILCSKVSEDENHALFGGKGVEVNIWNLHECVKIWTAKSPPKDNLGIFTPTWFTCATFLSKDDHRKFIAGTNSHQVRLYDISAQRRPVISIDFRE...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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