Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G000408`

染色体: Chr05 坐标: 3074322-3082801 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G000408`
名称	SmilChr05G000408
描述	ABC transporter C family member 12-like
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	3074322 - 3082801 / `-`

ID 对照

NCBI Gene ID	`LOC130985125`
GeneID	`130985125`
locus_tag	`-`
NCBI Name	`LOC130985125`
原始查询	`LOC130985125`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	ABC transporter C family member 12-like
产物	ABC transporter C family member 12-like
Arabidopsis	`AT2G34660` (ABCC2) multidrug resistance-associated protein 2 [Source:NCBI gene (formerly Entrezgene);Acc:818031] identity=68.1; qcov=1; evalue=0; confidence=high
Rice	`Os04g0620000` (MRP1) - identity=68.8; qcov=1; evalue=0; confidence=high
GO	GO:0005524 (ATP binding); GO:0016020 (membrane); GO:0016887 (ATP hydrolysis activity); GO:0055085 (transmembrane transport); GO:0140359 (ABC-type transporter activity)
KEGG	-
Pfam	PF00005 (ABC_tran); PF00664 (ABC_membrane)
InterPro	-
eggNOG	-
NR	GeneID:130985125

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Vacuole	液泡	0.80000	`XP_057763901.1`
2	Vacuole membrane	液泡膜	0.80000	`XP_057763901.1`
3	Cell membrane	细胞膜	0.40000	`XP_057763901.1`
4	Nucleus	细胞核	0.00000	`XP_057763901.1`
5	Chromosome	染色体	0.00000	`XP_057763901.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:3074439`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A2
`Chr5:3074472`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B85
`Chr5:3074727`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B1,C12
`Chr5:3074744`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B1,C12,C52
`Chr5:3074749`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B1,C12,C52
`Chr5:3074771`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B1,C12,C52
`Chr5:3074851`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B104,B113,C35
`Chr5:3074895`	`T`	`TC`	1bp_insertion	frameshift_variant	45	A24,B1,B113,B119,B121,B123,B126,B131,B134,B14,B15,B27,B29,B36,B41,B45,B55,B60,B78,B9,B94,B95,C12,C21,C29,C35,C38,C40,C43,C52,C56,C70,C71,C75,C78,C84,C9,D10,D11,D3,D4,D5,D6,D7,D9
`Chr5:3074907`	`CT`	`C`	1bp_deletion	frameshift_variant	44	A24,B1,B113,B119,B123,B126,B131,B134,B14,B15,B27,B29,B33,B36,B41,B45,B55,B60,B78,B9,B94,B95,C12,C21,C29,C35,C38,C40,C43,C52,C56,C70,C71,C75,C78,C84,C9,D10,D3,D4,D5,D6,D7,D9
`Chr5:3074981`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B85
`Chr5:3074999`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B1,B140,C86,D7
`Chr5:3075007`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A18,A2,B140

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057763901.1

1621 aa

810

1621

ABC_membrane

ABC_tran

ABC_membrane

ABC_tran

PF00664 ABC_membrane 303-570 aa PF00005 ABC_tran 632-767 aa PF00664 ABC_membrane 924-1170 aa PF00005 ABC_tran 1259-1407 aa

XP_057763902.1

1621 aa

810

1621

ABC_membrane

ABC_tran

ABC_membrane

ABC_tran

PF00664 ABC_membrane 303-570 aa PF00005 ABC_tran 632-767 aa PF00664 ABC_membrane 924-1170 aa PF00005 ABC_tran 1259-1407 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057763901.1`	Pfam	`PF00664`	ABC_membrane	Family	303	570	7.2e-67	226.7	ABC transporter transmembrane region
`XP_057763901.1`	Pfam	`PF00005`	ABC_tran	Domain	632	767	2.8e-45	155.0	ABC transporter
`XP_057763901.1`	Pfam	`PF00664`	ABC_membrane	Family	924	1170	7.2e-67	226.7	ABC transporter transmembrane region
`XP_057763901.1`	Pfam	`PF00005`	ABC_tran	Domain	1259	1407	2.8e-45	155.0	ABC transporter
`XP_057763902.1`	Pfam	`PF00664`	ABC_membrane	Family	303	570	7.2e-67	226.7	ABC transporter transmembrane region
`XP_057763902.1`	Pfam	`PF00005`	ABC_tran	Domain	632	767	2.8e-45	155.0	ABC transporter
`XP_057763902.1`	Pfam	`PF00664`	ABC_membrane	Family	924	1170	7.2e-67	226.7	ABC transporter transmembrane region
`XP_057763902.1`	Pfam	`PF00005`	ABC_tran	Domain	1259	1407	2.8e-45	155.0	ABC transporter

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057907918.1
GATTTTTCGCCTGATTCCGTAAGAAAAAAAAAACAAAACAAAACAAAAAAAAAAAGTCTTTTCTTCTTAATCAATCCGAAGTAGAAATACAAATACTAGTGACTAATCTTTTATGACAATCTCCCAAAAAAGCCTCTATTTTTCAGCGTAGGAGTTCGTAAGCAATGACGCTCGCGAGTTTTTGTCTCTTTGTCCTTTTCTATAGCCTCGTAGTCTTATGTCGTTTTCTTAATTATTTCGATTTTAGCATTGGAAGTATC...

XM_057907919.1
CGTAGGAGTTCGTAAGCAATGACGCTCGCGAGTTTTTGTCTCTTTGTCCTTTTCTATAGCCTCGTAGTCTTATGTCGTTTTCTTAATTATTTCGATTTTAGCATTGGAAGTATCTTTTGTTTATAAGAGTGTTCCAACCATGTGATCGTTGGCTGTGAAGAAGAAGTGAGACTGCTGCTGCAGCGTTCCCACTTCTCATGCAAACAACTTCCTAAGACTAGTGCTAGTGAGTTTATCGCTTATCGCGTTGATTGCGCTCT...

CDS

2 records

下载 CDS FASTA

LOC130985125
ATGGATTCCGACGGCCCCTTAGTCTGGTTTTGCCGGCCAGTGGCGAATGGCGTCTGGGCTCAAGAGACGGACAGCGCCTTTGGTGCTTACACGCCCTGTGCCGTTGATTCTGTAGTGGGGAATGTCTCCCACTTAGTTCTTCTTGGGATGTGCCTCTACAGAGTGTGGCTCATCAAAGTTAACCCCAAAGTCCAGCGCTACTGCTTGAGATCGAATCTCTGCAACTATGCATTGGCCGTGCTCTTCACTTGCTGCGCTGC...

Protein

2 records

下载 Protein FASTA

XP_057763901.1
MDSDGPLVWFCRPVANGVWAQETDSAFGAYTPCAVDSVVGNVSHLVLLGMCLYRVWLIKVNPKVQRYCLRSNLCNYALAVLFTCCAAEPLCRLVMGLSIFSFDTESGLAPFEMVHLGIEIVSWCSMVAMLLVETKIYVKEFRWYIRFGLMYVLVGDAVIFNFIFPLREFYGASTLYLFFSSVFFQVLLGILLLAYVPKLDSYPGYVPLPGSVDDTKNEKPLGEQVCPERGANFFSAIYFDWMTPLMQQGYKRPITEKDVW...

XP_057763902.1
MDSDGPLVWFCRPVANGVWAQETDSAFGAYTPCAVDSVVGNVSHLVLLGMCLYRVWLIKVNPKVQRYCLRSNLCNYALAVLFTCCAAEPLCRLVMGLSIFSFDTESGLAPFEMVHLGIEIVSWCSMVAMLLVETKIYVKEFRWYIRFGLMYVLVGDAVIFNFIFPLREFYGASTLYLFFSSVFFQVLLGILLLAYVPKLDSYPGYVPLPGSVDDTKNEKPLGEQVCPERGANFFSAIYFDWMTPLMQQGYKRPITEKDVW...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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