Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G000414`

染色体: Chr05 坐标: 3133701-3136439 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G000414`
名称	SmilChr05G000414
描述	phosphoribosylformylglycinamidine cyclo-ligase, chloroplastic-like
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	3133701 - 3136439 / `+`

ID 对照

NCBI Gene ID	`LOC130985132`
GeneID	`130985132`
locus_tag	`-`
NCBI Name	`LOC130985132`
原始查询	`LOC130985132`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	phosphoribosylformylglycinamidine cyclo-ligase, chloroplastic-like
产物	phosphoribosylformylglycinamidine cyclo-ligase%2C chloroplastic-like
Arabidopsis	`AT3G55010` (PUR5) phosphoribosylformylglycinamidine cyclo-ligase, chloroplast / phosphoribosyl-aminoimidazole synthetase / AIR synthase (PUR5) [Source:NCBI gene (formerly Entrezgene);Acc:824667] identity=80.5; qcov=0.994; evalue=0; confidence=high
Rice	`Os03g0831500` (OSJNBb0027B08.7) - identity=79.6; qcov=0.979; evalue=0; confidence=high
GO	GO:0004637 (phosphoribosylamine-glycine ligase activity); GO:0004641 (phosphoribosylformylglycinamidine cyclo-ligase activity); GO:0005829 (cytosol); GO:0006189 ('de novo' IMP biosynthetic process); GO:0046084 (adenine biosynthetic process)
KEGG	smil00230 (Purine metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage))
Pfam	PF00586 (AIRS); PF02769 (AIRS_C)
InterPro	-
eggNOG	-
NR	GeneID:130985132

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057763916.1`
2	Cytoplasm	细胞质	1.00000	`XP_057763918.1`
3	Cytosol	细胞质基质	1.00000	`XP_057763918.1`
4	Chloroplast stroma	叶绿体基质	0.20000	`XP_057763916.1`
5	Nucleus	细胞核	0.20000	`XP_057763918.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:3134344`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A2,B24
`Chr5:3134360`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A2,B24
`Chr5:3134386`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B80,C23
`Chr5:3134429`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr5:3134492`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C11,C69
`Chr5:3134737`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B35
`Chr5:3134742`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C4,C62
`Chr5:3134848`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A5,B73
`Chr5:3134916`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A21,B124,B82,B94
`Chr5:3135043`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B132,B14,B30,D11
`Chr5:3135462`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B30,D11
`Chr5:3135471`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A2,B112,B24

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057763916.1

396 aa

198

396

AIRS

AIRS_C

PF00586 AIRS 110-218 aa PF02769 AIRS_C 230-393 aa

XP_057763917.1

396 aa

198

396

AIRS

AIRS_C

PF00586 AIRS 110-218 aa PF02769 AIRS_C 230-393 aa

XP_057763918.1

335 aa

168

335

AIRS

AIRS_C

PF00586 AIRS 49-157 aa PF02769 AIRS_C 169-332 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057763916.1`	Pfam	`PF00586`	AIRS	Domain	110	218	3.8e-24	86.0	AIR synthase related protein, N-terminal domain
`XP_057763916.1`	Pfam	`PF02769`	AIRS_C	Domain	230	393	5.8e-36	124.7	AIR synthase related protein, C-terminal domain
`XP_057763917.1`	Pfam	`PF00586`	AIRS	Domain	110	218	3.8e-24	86.0	AIR synthase related protein, N-terminal domain
`XP_057763917.1`	Pfam	`PF02769`	AIRS_C	Domain	230	393	5.8e-36	124.7	AIR synthase related protein, C-terminal domain
`XP_057763918.1`	Pfam	`PF00586`	AIRS	Domain	49	157	2.7e-24	86.4	AIR synthase related protein, N-terminal domain
`XP_057763918.1`	Pfam	`PF02769`	AIRS_C	Domain	169	332	4e-36	125.3	AIR synthase related protein, C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057907935.1
TTTGAAAATGCAAAAAAAAAAAAAGGAGAAAAGAAGAGTGGAAAATACATACTGCAGAAGTAAGAAAAAGAAAAGGAGCGAGAGCACCTCTCCGCCGCGCCGACCGCCGCCTCTCTCCTCCGCCGTCAACCCCAAAATCTTAACTTTTTAACTGGGTAACTCTTGGAAGCTATCAGTTGAATCCACAGAAGAAGCTCTTTAAATTTTCCGAGGAATGAAATTAAGATTAGAAGAGGAACTAGGAAAGGCAGAGGTGTGGT...

XM_057907933.1
TTGAAAATGCAAAAAAAAAAAAAGGAGAAAAGAAGAGTGGAAAATACATACTGCAGAAGTAAGAAAAAGAAAAGGAGCGAGAGCACCTCTCCGCCGCGCCGACCGCCGCCTCTCTCCTCCGCCGTCAACCCCAAAATCTTAACTTTTTAACTGGGTAACTCTTGGAAGCTATCAGTTGAATCCACAGAAGAAGCTCTTTAAATTTTCCGAGGGATTTGCTTGTTTGTCAAGAAAAATAAACCATGAATACTTCCTGCAAA...

CDS

3 records

下载 CDS FASTA

LOC130985132
ATGAATACTTCCTGCAAAGCAAATACAGAGCTCTCCCGCTGTATCTCGAGTTCGATTAATCATAACTTGTTCAAGATTGGTAAAGACCAGTTAACAAGAGGACTCTTGCCTTTCTTGTCCAAGAACTGCAGGAATGAAATTAAGATTAGAAGAGGAACTAGGAAAGGCAGAGGTGTGGTTTCTATGTCGACAACTGAGGCTGCAGAAAAGAGTGATGGACTTACTTACAAGGATGCCGGAGTTGACATCGATGCTGGCTC...

Protein

3 records

下载 Protein FASTA

XP_057763916.1
MNTSCKANTELSRCISSSINHNLFKIGKDQLTRGLLPFLSKNCRNEIKIRRGTRKGRGVVSMSTTEAAEKSDGLTYKDAGVDIDAGSELVKRIAKMAPGIGGFGGLFPLGDSYLVAGTDGVGTKLKLAFETGIHDTIGIDLVAMSVNDIITSGAKPLFFLDYFATSRLDVDLAEKVIKGIVDGCQQSDCALLGGETAEMPDFYADGEYDLSGFAVGIVKKDSVIDGKNIEVGDVLIGLPSSGVHSNGFSLVRRVLERSGL...

XP_057763917.1
MNTSCKANTELSRCISSSINHNLFKIGKDQLTRGLLPFLSKNCRNEIKIRRGTRKGRGVVSMSTTEAAEKSDGLTYKDAGVDIDAGSELVKRIAKMAPGIGGFGGLFPLGDSYLVAGTDGVGTKLKLAFETGIHDTIGIDLVAMSVNDIITSGAKPLFFLDYFATSRLDVDLAEKVIKGIVDGCQQSDCALLGGETAEMPDFYADGEYDLSGFAVGIVKKDSVIDGKNIEVGDVLIGLPSSGVHSNGFSLVRRVLERSGL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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