当前解析结果
SmilChr05G000419| 统一新 Gene ID | SmilChr05G000419 |
|---|---|
| 名称 | SmilChr05G000419 |
| 描述 | F-box protein SKIP19-like |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 3164749 - 3167927 / - |
| NCBI Gene ID | LOC130985138 |
|---|---|
| GeneID | 130985138 |
| locus_tag | - |
| NCBI Name | LOC130985138 |
| 原始查询 | LOC130985138 |
| 来源 | GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog |
|---|---|
| 描述 | F-box protein SKIP19-like |
| 产物 | F-box protein SKIP19-like |
| Arabidopsis | AT4G05460 (AT4G05460)RNI-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:825896] identity=39.6; qcov=0.771; evalue=4.27e-64; confidence=medium |
| Rice | Os02g0317500 (OsFbox087)- identity=38.6; qcov=0.668; evalue=4.94e-46; confidence=medium |
| GO | GO:0005515 (protein binding) |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130985138 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057763924.1 |
| 2 | Cytoplasm | 细胞质 | 0.20000 | XP_057763924.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057763924.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057763924.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057763924.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:3165139 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B117,B135,C17,C18 |
Chr5:3165175 |
CAT |
C |
2bp_deletion | frameshift_variant | 1 | C67 |
Chr5:3165175 |
CAT |
C |
2bp_deletion | CDS_variant | 1 | C67 |
Chr5:3165179 |
A |
AT |
1bp_insertion | stop_gained,frameshift_variant | 1 | C67 |
Chr5:3165179 |
A |
AT |
1bp_insertion | CDS_variant | 1 | C67 |
Chr5:3165187 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C18 |
Chr5:3165239 |
ACT |
A |
2bp_deletion | frameshift_variant | 3 | C28,C51,C77 |
Chr5:3165239 |
ACT |
A |
2bp_deletion | CDS_variant | 3 | C28,C51,C77 |
Chr5:3165247 |
AG |
A |
1bp_deletion | frameshift_variant | 3 | C28,C51,C77 |
Chr5:3165247 |
AG |
A |
1bp_deletion | CDS_variant | 3 | C28,C51,C77 |
Chr5:3165253 |
TA |
T |
1bp_deletion | frameshift_variant | 3 | A16,C41,C83 |
Chr5:3165253 |
TA |
T |
1bp_deletion | CDS_variant | 3 | A16,C41,C83 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。