Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G000423`

染色体: Chr05 坐标: 3195085-3196928 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G000423`
名称	SmilChr05G000423
描述	putative F-box/LRR-repeat protein 23
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	3195085 - 3196928 / `-`

ID 对照

NCBI Gene ID	`LOC130985142`
GeneID	`130985142`
locus_tag	`-`
NCBI Name	`LOC130985142`
原始查询	`LOC130985142`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	putative F-box/LRR-repeat protein 23
产物	putative F-box/LRR-repeat protein 23
Arabidopsis	`AT4G05460` (AT4G05460) RNI-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:825896] identity=41.6; qcov=0.853; evalue=3.54e-54; confidence=medium
Rice	`Os02g0317500` (OsFbox087) - identity=36.5; qcov=0.805; evalue=4.75e-36; confidence=medium
GO	GO:0005515 (protein binding)
KEGG	-
Pfam	PF12937 (F-box-like); PF24758 (LRR_At5g56370)
InterPro	-
eggNOG	-
NR	GeneID:130985142

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057763926.1`
2	Cytoplasm	细胞质	0.40000	`XP_057763926.1`
3	Chromosome	染色体	0.00000	`XP_057763926.1`
4	Centromere	着丝粒	0.00000	`XP_057763926.1`
5	Chromatin	染色质	0.00000	`XP_057763926.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:3195404`	`A`	`AT`	1bp_insertion	frameshift_variant	16	B100,B131,B134,B18,B21,B23,B36,B40,B43,B62,B7,C47,C5,C64,C76,C81
`Chr5:3195405`	`CAA`	`C`	2bp_deletion	frameshift_variant	6	B24,C17,C35,C38,C4,C8
`Chr5:3195421`	`A`	`ATT`	2bp_insertion	stop_gained,frameshift_variant	17	B100,B131,B134,B18,B21,B23,B36,B40,B43,B62,B7,C29,C47,C5,C64,C76,C81
`Chr5:3195424`	`T`	`TC`	1bp_insertion	frameshift_variant	17	B100,B131,B134,B18,B21,B23,B36,B40,B43,B62,B7,C29,C47,C5,C64,C76,C81
`Chr5:3195426`	`G`	`GGC`	2bp_insertion	frameshift_variant	17	B100,B131,B134,B18,B21,B23,B36,B40,B43,B62,B7,C29,C47,C5,C64,C76,C81
`Chr5:3195435`	`A`	`AT`	1bp_insertion	frameshift_variant	29	A1,A10,A11,A16,A3,A4,A5,A7,B1,B100,B101,B103,B108,B134,B135,B2,B3,B31,B49,B68,B79,C14,C23,C24,C7,C72,C82,D11,D6
`Chr5:3195444`	`A`	`AG`	1bp_insertion	frameshift_variant	102	A14,A15,A18,A2,A21,A23,A4,A9,B10,B100,B105,B106,B109,B11,B111,B112,B113,B115,B118,B122,B126,B128,B130,B135,B136,B14,B18,B19,B22,B23,B24,B25,B28,B29,B30,B31,B32,B36,B37,B38,B39,B42,B44,B46,B47,B54,B59,B62,B63,B64,B67,B68,B72,B75,B8,B85,B88,B90,B92,B93,B94,C1,C12,C17,C19,C20,C24,C27,C30,C32,C35,C43,C45,C46,C47,C48,C49,C5,C52,C54,C58,C59,C61,C63,C65,C66,C68,C76,C77,C79,C81,C83,C84,C86,C9,D10,D11,D2,D3,D5,D7,D8
`Chr5:3195473`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C16
`Chr5:3195537`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A14,B112,B127,C14
`Chr5:3195624`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A4,B76,C18
`Chr5:3195655`	`C`	`T`	EMS_canonical_SNV	stop_gained	145	A1,A13,A14,A16,A18,A20,A21,A22,A24,A25,A4,A5,A6,A7,A8,A9,B10,B100,B102,B103,B104,B105,B106,B108,B109,B113,B117,B119,B120,B127,B129,B130,B131,B133,B134,B135,B137,B138,B139,B140,B16,B17,B18,B2,B20,B21,B23,B24,B26,B27,B28,B33,B36,B38,B39,B40,B42,B43,B45,B47,B48,B53,B56,B57,B59,B6,B60,B62,B65,B69,B70,B71,B73,B74,B76,B77,B79,B80,B84,B85,B9,B91,B94,B95,B96,B97,B98,B99,C10,C11,C17,C18,C2,C21,C22,C24,C25,C26,C29,C30,C31,C32,C34,C35,C36,C38,C39,C4,C41,C42,C43,C44,C47,C48,C49,C5,C51,C53,C55,C56,C57,C59,C6,C60,C63,C64,C65,C66,C67,C68,C69,C72,C76,C78,C8,C81,C83,C85,C87,D10,D2,D5,D6,D7,D9
`Chr5:3195673`	`A`	`AC`	1bp_insertion	frameshift_variant	146	A1,A13,A14,A16,A18,A20,A21,A22,A24,A25,A4,A5,A6,A7,A8,A9,B10,B100,B102,B103,B104,B105,B106,B108,B109,B113,B117,B119,B120,B127,B129,B130,B131,B133,B134,B135,B137,B138,B139,B140,B16,B17,B18,B2,B20,B21,B23,B24,B26,B27,B28,B33,B36,B38,B39,B40,B42,B43,B45,B47,B48,B53,B56,B57,B59,B6,B60,B62,B65,B69,B70,B71,B73,B74,B76,B77,B79,B80,B84,B85,B9,B91,B94,B95,B96,B97,B98,B99,C10,C11,C17,C18,C2,C21,C22,C24,C25,C26,C29,C30,C31,C32,C34,C35,C36,C38,C39,C4,C41,C42,C43,C44,C47,C48,C49,C5,C51,C53,C55,C56,C57,C59,C6,C60,C63,C64,C65,C66,C67,C68,C69,C72,C76,C78,C8,C80,C81,C83,C85,C87,D10,D2,D5,D6,D7,D9

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057763926.1

313 aa

156

313

F-box-like

LRR_At5g56370

PF12937 F-box-like 51-95 aa PF24758 LRR_At5g56370 239-277 aa

XP_057763927.1

313 aa

156

313

F-box-like

LRR_At5g56370

PF12937 F-box-like 51-95 aa PF24758 LRR_At5g56370 239-277 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057763926.1`	Pfam	`PF12937`	F-box-like	Domain	51	95	3.1e-08	34.0	F-box-like
`XP_057763926.1`	Pfam	`PF24758`	LRR_At5g56370	Repeat	239	277	2e-11	44.7	FBD-associated F-box protein At5g56370, LRR repeats
`XP_057763927.1`	Pfam	`PF12937`	F-box-like	Domain	51	95	3.1e-08	34.0	F-box-like
`XP_057763927.1`	Pfam	`PF24758`	LRR_At5g56370	Repeat	239	277	2e-11	44.7	FBD-associated F-box protein At5g56370, LRR repeats

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057907944.1
AACTGAATTTTTTTTTCCCGTTTTGCGCCTAAATATTAATCCAAATAAACAAACCTTTTTCAAATTCCTCTCCTCCTTCGCATTCTGCTGTTTCCAATCGCCATGGAAAGAAGGAAATGCAGAAAAATTCCTCTCCTTCGCGTTATGCGGTTTCCAACCGCCAAGGAAAGAAGGAAAAGCAGAAACCGAAAACGGCGGCTTCAAAGAAAAACTCCGGCGCCAGCTGCTTCATCCTCGGCCTCTCCGCCGCCGTGGATCGA...

XM_057907943.1
ACTGAATTTTTTTTTCCCGTTTTGCGCCTAAATATTAATCCAAATAAACAAACCTTTTTCAAATTCCTCTCCTCCTTCGCATTCTGCTGTTTCCAATCGCCATGGAAAGAAGGAAATGCAGAAAAATTCCTCTCCTTCGCGTTATGCGGTTTCCAACCGCCAAGGAAAGAAGGAAAAGCAGAAACCGAAAACGGCGGCTTCAAAGAAAAACTCCGGCGCCAGCTGCTTCATCCTCGGCCTCTCCGCCGCCGTGGATCGAA...

CDS

2 records

下载 CDS FASTA

LOC130985142
ATGGAAAGAAGGAAATGCAGAAAAATTCCTCTCCTTCGCGTTATGCGGTTTCCAACCGCCAAGGAAAGAAGGAAAAGCAGAAACCGAAAACGGCGGCTTCAAAGAAAAACTCCGGCGCCAGCTGCTTCATCCTCGGCCTCTCCGCCGCCGTGGATCGAACTTCCAGAAGATGTAACGGTCAACATTCTGCAGAGGTTGGGCGCGGAGGGGATGCTAAGCGCGGAACTAGTGTGTAGTAGCTGGTGGAAGGTTTGCAAGGA...

Protein

2 records

下载 Protein FASTA

XP_057763926.1
MERRKCRKIPLLRVMRFPTAKERRKSRNRKRRLQRKTPAPAASSSASPPPWIELPEDVTVNILQRLGAEGMLSAELVCSSWWKVCKDPAMWRVIDLCNPDPGATNLRRKYTAMCRRAVDRSQGQLVDLTMDSFGNGHLIKYVAHRSRDLKRLKLVSCIHIAGCLLVQAVEKLGQLEELHLNTSTWISAHHIEAIGNACPKLKSFSFSEDGSWCQLPPYLENGGIDDKSDWNRYARAIGKCMPNLHHLQLCSCLMQNEGLA...

XP_057763927.1
MERRKCRKIPLLRVMRFPTAKERRKSRNRKRRLQRKTPAPAASSSASPPPWIELPEDVTVNILQRLGAEGMLSAELVCSSWWKVCKDPAMWRVIDLCNPDPGATNLRRKYTAMCRRAVDRSQGQLVDLTMDSFGNGHLIKYVAHRSRDLKRLKLVSCIHIAGCLLVQAVEKLGQLEELHLNTSTWISAHHIEAIGNACPKLKSFSFSEDGSWCQLPPYLENGGIDDKSDWNRYARAIGKCMPNLHHLQLCSCLMQNEGLA...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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