当前解析结果
SmilChr05G000435| 统一新 Gene ID | SmilChr05G000435 |
|---|---|
| 名称 | SmilChr05G000435 |
| 描述 | CSC1-like protein ERD4 |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 3285572 - 3292831 / - |
| NCBI Gene ID | LOC130985155 |
|---|---|
| GeneID | 130985155 |
| locus_tag | - |
| NCBI Name | LOC130985155 |
| 原始查询 | LOC130985155 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | CSC1-like protein ERD4 |
| 产物 | CSC1-like protein ERD4 |
| Arabidopsis | AT1G30360 (ERD4)Early-responsive to dehydration stress protein (ERD4) [Source:NCBI gene (formerly Entrezgene);Acc:839916] identity=54.5; qcov=0.694; evalue=2.47e-149; confidence=high |
| Rice | Os07g0150100 (OsOSCA3.1)- identity=50.1; qcov=0.713; evalue=5.1e-133; confidence=high |
| GO | GO:0005227 (calcium-activated cation channel activity); GO:0005886 (plasma membrane) |
| KEGG | - |
| Pfam | PF02714 (RSN1_7TM); PF13967 (RSN1_TM); PF14703 (PHM7_cyt) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130985155 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 0.80000 | XP_057763943.1 |
| 2 | Vacuole membrane | 液泡膜 | 0.20000 | XP_057763943.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057763943.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057763943.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057763943.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:3285813 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B22,B91 |
Chr5:3285969 |
G |
GA |
1bp_insertion | frameshift_variant | 1 | C84 |
Chr5:3285969 |
G |
GA |
1bp_insertion | CDS_variant | 1 | C84 |
Chr5:3286025 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B125,B61,B8,C72,C73 |
Chr5:3286062 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A21,B4,C27,C85 |
Chr5:3286581 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B2 |
Chr5:3286765 |
A |
AAT |
2bp_insertion | frameshift_variant | 28 | A2,A6,B102,B104,B11,B112,B131,B23,B24,B3,B37,B82,B95,C14,C22,C23,C27,C3,C32,C39,C5,C52,C63,C68,C77,C80,C9,D8 |
Chr5:3287198 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B57 |
Chr5:3287248 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C2 |
Chr5:3287275 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B7,C7 |
Chr5:3287279 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B85 |
Chr5:3287336 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B10 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057763943.1PF13967
RSN1_TM 5-166 aa
PF14703
PHM7_cyt 188-260 aa
PF14703
PHM7_cyt 261-317 aa
PF02714
RSN1_7TM 328-385 aa
PF02714
RSN1_7TM 389-517 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057763943.1 |
Pfam | PF13967 |
RSN1_TM | Family | 5 | 166 | 6.4e-35 | 120.8 | Late exocytosis, associated with Golgi transport |
XP_057763943.1 |
Pfam | PF14703 |
PHM7_cyt | Domain | 188 | 260 | 2.7e-17 | 64.2 | Cytosolic domain of 10TM putative phosphate transporter |
XP_057763943.1 |
Pfam | PF14703 |
PHM7_cyt | Domain | 261 | 317 | 2.7e-17 | 64.2 | Cytosolic domain of 10TM putative phosphate transporter |
XP_057763943.1 |
Pfam | PF02714 |
RSN1_7TM | Family | 328 | 385 | 1.9e-40 | 139.7 | Calcium-dependent channel, 7TM region, putative phosphate |
XP_057763943.1 |
Pfam | PF02714 |
RSN1_7TM | Family | 389 | 517 | 1.9e-40 | 139.7 | Calcium-dependent channel, 7TM region, putative phosphate |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。