Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G002625`

染色体: Chr01 坐标: 44534915-44543927 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G002625`
名称	SmilChr01G002625
描述	phytyl ester synthase 1, chloroplastic-like
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	44534915 - 44543927 / `+`

ID 对照

NCBI Gene ID	`LOC130985211`
GeneID	`130985211`
locus_tag	`-`
NCBI Name	`LOC130985211`
原始查询	`LOC130985211`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	phytyl ester synthase 1, chloroplastic-like
产物	phytyl ester synthase 1%2C chloroplastic-like
Arabidopsis	`AT1G54570` (PES1) Esterase/lipase/thioesterase family protein [Source:NCBI gene (formerly Entrezgene);Acc:841899] identity=63.6; qcov=0.977; evalue=0; confidence=high
Rice	`Os01g0362100` - identity=59.9; qcov=0.974; evalue=0; confidence=high
GO	GO:0008374 (GO:0008374); GO:0016020 (membrane)
KEGG	smil00073 (Cutin, suberine and wax biosynthesis - Salvia miltiorrhiza (redroot sage)); smil00561 (Glycerolipid metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage))
Pfam	PF00561 (Abhydrolase_1); PF03982 (DAGAT); PF12146 (Hydrolase_4)
InterPro	-
eggNOG	-
NR	GeneID:130985211

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057764029.1`
2	Chloroplast membrane	叶绿体膜	0.80000	`XP_057764029.1`
3	Endoplasmic reticulum	内质网	0.60000	`XP_057764037.1`
4	Chloroplast stroma	叶绿体基质	0.20000	`XP_057764029.1`
5	Lipid droplet	脂滴	0.20000	`XP_057764037.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:44535159`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A2,C22
`Chr1:44536483`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B9,C14,C15,C31
`Chr1:44543309`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A25
`Chr1:44543485`	`AC`	`A`	1bp_deletion	frameshift_variant	1	D10
`Chr1:44543485`	`AC`	`A`	1bp_deletion	CDS_variant	1	D10

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057764029.1

713 aa

356

713

Hydrolase_4

Abhydrolase_1

DAGAT

PF12146 Hydrolase_4 193-379 aa PF00561 Abhydrolase_1 194-379 aa PF03982 DAGAT 506-583 aa

XP_057764037.1

571 aa

286

571

Hydrolase_4

Abhydrolase_1

DAGAT

PF12146 Hydrolase_4 51-237 aa PF00561 Abhydrolase_1 52-237 aa PF03982 DAGAT 364-441 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057764029.1`	Pfam	`PF12146`	Hydrolase_4	Domain	193	379	8.2e-10	39.1	Serine aminopeptidase, S33
`XP_057764029.1`	Pfam	`PF00561`	Abhydrolase_1	Domain	194	379	9.2e-07	29.5	alpha/beta hydrolase fold
`XP_057764029.1`	Pfam	`PF03982`	DAGAT	Family	506	583	4.3e-05	23.3	Diacylglycerol acyltransferase
`XP_057764037.1`	Pfam	`PF12146`	Hydrolase_4	Domain	51	237	4.4e-10	40.0	Serine aminopeptidase, S33
`XP_057764037.1`	Pfam	`PF00561`	Abhydrolase_1	Domain	52	237	6.4e-07	30.0	alpha/beta hydrolase fold
`XP_057764037.1`	Pfam	`PF03982`	DAGAT	Family	364	441	3.1e-05	23.8	Diacylglycerol acyltransferase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057908054.1
TACTAAATTTTGTGTGGCCTCTATTTCTTTCTTGTCTCTTCTCATTTTCTCTTTTTCTTCCTCTGTTGTAATTTTCCTAGATTTTAGGATATATAAATGAGTTCCTAGCGGGAGGGCCCTTTTCTATGTGCTTCATTTTGAGATAGTTTCTCAAGTCTTTGAGAATCTTGCAGCTTCCATGGCTTCAACTGTGAAGAGTTTTTCTCTATCACCACCTCATTTTGCTTCGAATTTAGAGAGAAGGGCTCATTCTAGATACT...

XM_057908046.1
CTAAATTTTGTGTGGCCTCTATTTCTTTCTTGTCTCTTCTCATTTTCTCTTTTTCTTCCTCTGTTGTAATTTTCCTAGATTTTAGGATATATAAATGAGTTCCTAGCGGGAGGGCCCTTTTCTATGTGCTTCATTTTGAGATAGTTTCTCAAGTCTTTGAGAATCTTGCAGCTTCCATGGCTTCAACTGTGAAGAGTTTTTCTCTATCACCACCTCATTTTGCTTCGAATTTAGAGAGAAGGGCTCATTCTAGATACTCA...

CDS

2 records

下载 CDS FASTA

LOC130985211
ATGGCTTCAACTGTGAAGAGTTTTTCTCTATCACCACCTCATTTTGCTTCGAATTTAGAGAGAAGGGCTCATTCTAGATACTCAGTCAGGTGTTTATCTAGTAAGGATTCCACTGCTGCATTATCTTTTGATTCTGTGAAAGTTAATGGTGCAGCGAGTGGAGTGTCCTCTGCTGTGAAGGAGGAGAGAGAGAAGGTTGATCATGTGAGCTCAGTTGTTGAGGGAAAGAGGAGAGAGAAGGAGTCTCAGGAGGTAAAGTT...

LOC130985211
ATGTGGCCCTCATTTGAGAGGCTCACCTGTGTTATTTTTCTTGTCTGGGTCTTTGATGTTCGGTGCATGCATATCCCGGTGCAAGACCGAACCCCGTTTGAAGAGTTGGTAGTGTGGGTTGAAGGATCTTTGAGAGCCGAACACTCTTCATGTCCTAATAAGCCCATCTATCTGGTTGGAGATTCCTTCGGTGGATGCTTGGCTCTTGCAGTTGCAGCACGAAATCCTGATATTGATCTTGTAGTGATACTAGCGAATCC...

Protein

2 records

下载 Protein FASTA

XP_057764029.1
MASTVKSFSLSPPHFASNLERRAHSRYSVRCLSSKDSTAALSFDSVKVNGAASGVSSAVKEEREKVDHVSSVVEGKRREKESQEVKLEALWDDGYGTETVRDYLDYAGDIIKPDGGPVRWFTPISCGPHLRGSPVLFFLSGLDGVGLGLILHHKSLGKVFDVRCMHIPVQDRTPFEELVVWVEGSLRAEHSSCPNKPIYLVGDSFGGCLALAVAARNPDIDLVVILANPATSFGRSQLQSFLPLLEALPNELHNAVPYLL...

XP_057764037.1
MWPSFERLTCVIFLVWVFDVRCMHIPVQDRTPFEELVVWVEGSLRAEHSSCPNKPIYLVGDSFGGCLALAVAARNPDIDLVVILANPATSFGRSQLQSFLPLLEALPNELHNAVPYLLSFVMGDPVKLATVNIDKASPPTQYFEHLANNLTAMLPRLSGLADILPKEALLWKLKLLKAGAAYANSRLHAIKAEVLILASGKDNMLPSRDEAWRLSKSLKNCNIRYFKDNGHTILMEDGMNLLTIIKATSTYRRSRSHDYV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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