Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G000483`

染色体: Chr05 坐标: 3775335-3777887 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G000483`
名称	SmilChr05G000483
描述	uncharacterized SmilChr05G000483
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	3775335 - 3777887 / `+`

ID 对照

NCBI Gene ID	`LOC130985212`
GeneID	`130985212`
locus_tag	`-`
NCBI Name	`LOC130985212`
原始查询	`LOC130985212`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	SGS domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:839886]; symbol=AT1G30070; hit=AT1G30070; species=arabidopsis; confidence=high
产物	SGS domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:839886]; symbol=AT1G30070; hit=AT1G30070; species=arabidopsis; confidence=high
Arabidopsis	`AT1G30070` (AT1G30070) SGS domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:839886] identity=67.4; qcov=0.978; evalue=7.64e-109; confidence=high
Rice	`Os01g0757500` - identity=61.1; qcov=0.987; evalue=1.28e-97; confidence=high
GO	GO:0015631 (tubulin binding); GO:0031625 (ubiquitin protein ligase binding); GO:0044548 (S100 protein binding)
KEGG	-
Pfam	PF04969 (CS); PF09032 (Siah-Interact_N)
InterPro	-
eggNOG	-
NR	GeneID:130985212

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057764027.1`
2	Nucleus	细胞核	1.00000	`XP_057764028.1`
3	Cytosol	细胞质基质	1.00000	`XP_057764027.1`
4	Nucleoplasm	核质	1.00000	`XP_057764028.1`
5	Chromosome	染色体	0.00000	`XP_057764027.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:3775489`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B86
`Chr5:3775538`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C1
`Chr5:3776725`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A15,B113,B19,C30,C31
`Chr5:3776735`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A15,B113,B19,C30,C31
`Chr5:3776761`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A15,B113,B19,C30
`Chr5:3776811`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A15,B113,C30,C31
`Chr5:3776835`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A15,B113,C30,C31
`Chr5:3777081`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A15,B113,C30,C31
`Chr5:3777092`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B21,C41
`Chr5:3777118`	`GC`	`G`	1bp_deletion	frameshift_variant	1	C51
`Chr5:3777118`	`GC`	`G`	1bp_deletion	CDS_variant	1	C51
`Chr5:3777120`	`AC`	`A`	1bp_deletion	frameshift_variant	1	C51

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057764027.1

233 aa

116

233

Siah-Interact_N

PF09032 Siah-Interact_N 7-69 aa PF04969 CS 84-160 aa

XP_057764028.1

229 aa

114

229

Siah-Interact_N

PF09032 Siah-Interact_N 7-70 aa PF04969 CS 84-160 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057764027.1`	Pfam	`PF09032`	Siah-Interact_N	Domain	7	69	8.5e-08	33.1	Siah interacting protein, N terminal
`XP_057764027.1`	Pfam	`PF04969`	CS	Domain	84	160	3.5e-18	67.0	CS domain
`XP_057764028.1`	Pfam	`PF09032`	Siah-Interact_N	Domain	7	70	7.7e-08	33.2	Siah interacting protein, N terminal
`XP_057764028.1`	Pfam	`PF04969`	CS	Domain	84	160	3.3e-18	67.1	CS domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057908045.1
TACGGCCCAATATAAAGGAAGTCTAGAAACTTCTTTTGACTGAGCATTCTAGCTTTCTCTACTCCTCTCGACCCTTCAATATATCCAAGTTTTCTCGATTATTCAGCAAAACGATTTCCCAATTTGCAAGAGCAACGTAACAATGGCGAGCAGCGATGATTTCGCGCTGGACATCGAGGAATTGAAGCAGCTCCAAAGCATCGCAAAGCGGCCGCGCGTCGTTTCGCTCATTTCCTCCGAGATTCGCAACCTGGAGAAGT...

XM_057908044.1
TTCTAGCTTTCTCTACTCCTCTCGACCCTTCAATATATCCAAGTTTTCTCGATTATTCAGCAAAACGATTTCCCAATTTGCAAGAGCAACGTAACAATGGCGAGCAGCGATGATTTCGCGCTGGACATCGAGGAATTGAAGCAGCTCCAAAGCATCGCAAAGCGGCCGCGCGTCGTTTCGCTCATTTCCTCCGAGATTCGCAACCTGGAGAAGTTATCGAATGCAGCTGCCTCTGCACCGTCTCAGCACACACCCACCCC...

CDS

2 records

下载 CDS FASTA

LOC130985212
ATGGCGAGCAGCGATGATTTCGCGCTGGACATCGAGGAATTGAAGCAGCTCCAAAGCATCGCAAAGCGGCCGCGCGTCGTTTCGCTCATTTCCTCCGAGATTCGCAACCTGGAGAAGTTATCGAATGCAGCTGCCTCTGCACCGTCTCAGCACACACCCACCCCAGTTCCAGCTGTCAACACACCGATACCAACATCGAGTGTTCCGAAGGCTGTATCCAGCTCTTTGTTGAGTTATGTTCCTCTCGGTTCCTTCAGCTG...

Protein

2 records

下载 Protein FASTA

XP_057764027.1
MASSDDFALDIEELKQLQSIAKRPRVVSLISSEIRNLEKLSNAAASAPSQHTPTPVPAVNTPIPTSSVPKAVSSSLLSYVPLGSFSWDQDSDQVKIYVPLEGVDQEKVEAEFKPMSADIKLHDVQGKNYRCAVPKLFKEIAPEKCKFIVKPKRVVVTLAKAEKGNWLDLHFKEDKLKPNLEKERDPMAGIMDLMKVQLKLVHTIYAHTRLCYPVLTSRDLFTYRTCTRKVMRI

XP_057764028.1
MASSDDFALDIEELKQLQSIAKRPRVVSLISSEIRNLEKLSNAAASAPSQHTPTPVPAVNTPIPTSSVPKAVSSSLLSYVPLGSFSWDQDSDQVKIYVPLEGVDQEKVEAEFKPMSADIKLHDVQGKNYRCAVPKLFKEIAPEKCKFIVKPKRVVVTLAKAEKGNWLDLHFKEDKLKPNLEKERDPMAGIMDLMKNMYEEGDEDMKRTIAKAWTDARSGKAADPLQSYR

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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