当前解析结果
SmilChr01G002626| 统一新 Gene ID | SmilChr01G002626 |
|---|---|
| 名称 | SmilChr01G002626 |
| 描述 | plasma membrane ATPase 4-like |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 44548231 - 44549162 / + |
| NCBI Gene ID | LOC130985224 |
|---|---|
| GeneID | 130985224 |
| locus_tag | - |
| NCBI Name | LOC130985224 |
| 原始查询 | LOC130985224 |
| 来源 | GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog |
|---|---|
| 描述 | plasma membrane ATPase 4-like |
| 产物 | plasma membrane ATPase 4-like |
| Arabidopsis | AT2G07560 (HA6)H[+]-ATPase 6 [Source:NCBI gene (formerly Entrezgene);Acc:815329] identity=81; qcov=0.462; evalue=1.71e-18; confidence=low |
| Rice | Os02g0797300 (OSA6)- identity=83.3; qcov=0.462; evalue=7.62e-18; confidence=low |
| GO | GO:0005886 (plasma membrane); GO:0008553 (P-type proton-exporting transporter activity); GO:0051453 (regulation of intracellular pH); GO:1902600 (proton transmembrane transport) |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130985224 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Vacuole | 液泡 | 0.60000 | XP_057764046.1 |
| 2 | Cell membrane | 细胞膜 | 0.20000 | XP_057764046.1 |
| 3 | Endoplasmic reticulum | 内质网 | 0.20000 | XP_057764046.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057764046.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057764046.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:44548688 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A7,C81 |
Chr1:44548707 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C71 |
Chr1:44548715 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B13,B130,B136,C33 |
Chr1:44548720 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B98 |
Chr1:44548727 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B101 |
Chr1:44548733 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B35,B53,C11,C14,D2 |
Chr1:44548735 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | D11,D3,D4,D6 |
Chr1:44548738 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B13,B130,B136,C33 |
Chr1:44548743 |
G |
A |
EMS_canonical_SNV | stop_gained | 1 | B83 |
Chr1:44548743 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B83 |
Chr1:44548756 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C71 |
Chr1:44548767 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B65,C18,C49 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。