Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G000561`

染色体: Chr05 坐标: 4211519-4217521 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G000561`
名称	SmilChr05G000561
描述	ABC transporter B family member 9-like
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	4211519 - 4217521 / `+`

ID 对照

NCBI Gene ID	`LOC130985227`
GeneID	`130985227`
locus_tag	`-`
NCBI Name	`LOC130985227`
原始查询	`LOC130985227`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	ABC transporter B family member 9-like
产物	ABC transporter B family member 9-like
Arabidopsis	`AT4G18050` (ABCB9) P-glycoprotein 9 [Source:NCBI gene (formerly Entrezgene);Acc:827530] identity=65.2; qcov=0.988; evalue=0; confidence=high
Rice	`Os01g0695700` (OsABCB4) - identity=53.8; qcov=0.998; evalue=0; confidence=high
GO	GO:0005524 (ATP binding); GO:0016020 (membrane); GO:0016887 (ATP hydrolysis activity); GO:0055085 (transmembrane transport); GO:0140359 (ABC-type transporter activity)
KEGG	smil02010 (ABC transporters - Salvia miltiorrhiza (redroot sage))
Pfam	PF00005 (ABC_tran); PF00664 (ABC_membrane); PF09818 (ABC_ATPase)
InterPro	-
eggNOG	-
NR	GeneID:130985227

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057764048.1`
2	Nucleus	细胞核	0.00000	`XP_057764048.1`
3	Chromosome	染色体	0.00000	`XP_057764048.1`
4	Centromere	着丝粒	0.00000	`XP_057764048.1`
5	Chromatin	染色质	0.00000	`XP_057764048.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:4211560`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B1,C56,C81
`Chr5:4211565`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B66,C14
`Chr5:4211566`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B61,B63,B8,C73
`Chr5:4211667`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B125,B61,B63,B8,C73
`Chr5:4213220`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C12
`Chr5:4213221`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A16,B132
`Chr5:4213284`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B40
`Chr5:4213485`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A18
`Chr5:4213502`	`GC`	`G`	1bp_deletion	frameshift_variant	89	A11,A14,A15,A18,A20,A21,A23,A3,A4,A9,B1,B102,B106,B107,B109,B114,B120,B121,B123,B124,B127,B136,B138,B139,B140,B19,B2,B21,B22,B23,B25,B26,B28,B3,B30,B31,B33,B36,B38,B39,B40,B43,B44,B5,B52,B56,B59,B61,B7,B71,B80,B83,B84,B85,B94,C10,C13,C15,C21,C22,C28,C29,C30,C31,C37,C4,C48,C49,C5,C50,C52,C53,C56,C57,C6,C62,C64,C72,C73,C75,C77,C78,C79,C80,C81,C82,C87,D2,D6
`Chr5:4213609`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B66,C14
`Chr5:4213754`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B112,B37,C43,C83
`Chr5:4214072`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B41

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057764048.1

1255 aa

628

1255

ABC_membrane

ABC_tran

ABC_membrane

ABC_tran

PF00664 ABC_membrane 36-306 aa PF00005 ABC_tran 375-523 aa PF00664 ABC_membrane 691-961 aa PF00005 ABC_tran 1032-1180 aa

XP_057764049.1

962 aa

481

962

ABC_membrane

ABC_tran

ABC_ATPase

ABC_membrane

PF00664 ABC_membrane 36-306 aa PF00005 ABC_tran 375-523 aa PF09818 ABC_ATPase 462-527 aa PF00664 ABC_membrane 691-961 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057764048.1`	Pfam	`PF00664`	ABC_membrane	Family	36	306	6.5e-116	387.5	ABC transporter transmembrane region
`XP_057764048.1`	Pfam	`PF00005`	ABC_tran	Domain	375	523	2.7e-66	223.0	ABC transporter
`XP_057764048.1`	Pfam	`PF00664`	ABC_membrane	Family	691	961	6.5e-116	387.5	ABC transporter transmembrane region
`XP_057764048.1`	Pfam	`PF00005`	ABC_tran	Domain	1032	1180	2.7e-66	223.0	ABC transporter
`XP_057764049.1`	Pfam	`PF00664`	ABC_membrane	Family	36	306	1.3e-116	389.9	ABC transporter transmembrane region
`XP_057764049.1`	Pfam	`PF00005`	ABC_tran	Domain	375	523	4.5e-33	115.5	ABC transporter
`XP_057764049.1`	Pfam	`PF09818`	ABC_ATPase	Domain	462	527	7.3e-06	25.9	P-loop domain
`XP_057764049.1`	Pfam	`PF00664`	ABC_membrane	Family	691	961	1.3e-116	389.9	ABC transporter transmembrane region

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057908066.1
CTTCGAAATTTTCTGAATCGCAGAATAGATGGCCGATCCGGCGGCGGCGACGCTATCTGAGAAGAAAGAGGAGGAGAAAGTGCCGTATTATAAACTGTTTTCTTTTGCAGACAAGCTTGATGTACTTCTAATGGTGGTCGGGGCAATCGCAGCCATCGGGAATGGGGTGTCGCAGCCGCTCATGACGCTTATTTTCGGCAAGTTGGTGGATTCTTTCGGCGAAGGTGTTCGATCAACTATTGTGCATTCAGTTTCCAAGG...

XM_057908065.1
AATTTTCTGAATCGCAGAATAGATGGCCGATCCGGCGGCGGCGACGCTATCTGAGAAGAAAGAGGAGGAGAAAGTGCCGTATTATAAACTGTTTTCTTTTGCAGACAAGCTTGATGTACTTCTAATGGTGGTCGGGGCAATCGCAGCCATCGGGAATGGGGTGTCGCAGCCGCTCATGACGCTTATTTTCGGCAAGTTGGTGGATTCTTTCGGCGAAGGTGTTCGATCAACTATTGTGCATTCAGTTTCCAAGGTAGCGT...

CDS

2 records

下载 CDS FASTA

LOC130985227
ATGGCCGATCCGGCGGCGGCGACGCTATCTGAGAAGAAAGAGGAGGAGAAAGTGCCGTATTATAAACTGTTTTCTTTTGCAGACAAGCTTGATGTACTTCTAATGGTGGTCGGGGCAATCGCAGCCATCGGGAATGGGGTGTCGCAGCCGCTCATGACGCTTATTTTCGGCAAGTTGGTGGATTCTTTCGGCGAAGGTGTTCGATCAACTATTGTGCATTCAGTTTCCAAGGTAGCGTTGAAATTGGTATACTTGGGCAT...

Protein

2 records

下载 Protein FASTA

XP_057764048.1
MADPAAATLSEKKEEEKVPYYKLFSFADKLDVLLMVVGAIAAIGNGVSQPLMTLIFGKLVDSFGEGVRSTIVHSVSKVALKLVYLGIGGGVASLLQMMCWMVTGERQAARIRGLYLKTILRQDIEFFDTQTSTGEIIGRMSGDTILIQDAMGEKVGKFIQFASTFLGGFLIAFCRGWLLAIVLCTCIPALGIAGAFSAVLMGKMATLGQAAYAEAGNVVEQTVGSIRTVQSFTGEKQAVDKYDSKLQIAYKAAAKQGLAS...

XP_057764049.1
MADPAAATLSEKKEEEKVPYYKLFSFADKLDVLLMVVGAIAAIGNGVSQPLMTLIFGKLVDSFGEGVRSTIVHSVSKVALKLVYLGIGGGVASLLQMMCWMVTGERQAARIRGLYLKTILRQDIEFFDTQTSTGEIIGRMSGDTILIQDAMGEKVGKFIQFASTFLGGFLIAFCRGWLLAIVLCTCIPALGIAGAFSAVLMGKMATLGQAAYAEAGNVVEQTVGSIRTVQSFTGEKQAVDKYDSKLQIAYKAAAKQGLAS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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