当前解析结果
SmilChr05G000601| 统一新 Gene ID | SmilChr05G000601 |
|---|---|
| 名称 | SmilChr05G000601 |
| 描述 | probable LRR receptor-like serine/threonine-protein kinase RFK1 |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 4514070 - 4520901 / - |
| NCBI Gene ID | LOC130985230 |
|---|---|
| GeneID | 130985230 |
| locus_tag | - |
| NCBI Name | LOC130985230 |
| 原始查询 | LOC130985230 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | probable LRR receptor-like serine/threonine-protein kinase RFK1 |
| 产物 | probable LRR receptor-like serine/threonine-protein kinase RFK1 |
| Arabidopsis | AT1G29750 (RKF1)receptor-like kinase in flowers 1 [Source:NCBI gene (formerly Entrezgene);Acc:839853] identity=57; qcov=0.959; evalue=0; confidence=high |
| Rice | Os04g0616700- identity=40; qcov=0.959; evalue=0; confidence=medium |
| GO | GO:0004672 (protein kinase activity); GO:0005515 (protein binding); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF00560 (LRR_1); PF07714 (PK_Tyr_Ser-Thr); PF11721 (Malectin) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130985230 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057764053.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057764053.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057764053.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057764053.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057764053.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:4514437 |
GC |
G |
1bp_deletion | frameshift_variant | 1 | B60 |
Chr5:4514437 |
GC |
G |
1bp_deletion | CDS_variant | 1 | B60 |
Chr5:4514440 |
ACG |
A |
2bp_deletion | frameshift_variant | 47 | A16,A18,A22,A9,B1,B100,B104,B109,B113,B118,B128,B13,B134,B139,B2,B27,B30,B37,B38,B39,B47,B5,B57,B6,B62,B66,B71,B75,B82,B99,C12,C17,C2,C28,C30,C41,C44,C50,C53,C55,C57,C62,C63,C72,C76,C87,D10 |
Chr5:4514443 |
T |
TAC |
2bp_insertion | frameshift_variant | 47 | A16,A18,A22,A9,B1,B100,B104,B109,B113,B118,B128,B13,B134,B139,B2,B27,B30,B37,B38,B39,B47,B5,B57,B6,B62,B66,B71,B75,B82,B99,C12,C17,C2,C28,C30,C41,C44,C50,C53,C55,C57,C62,C63,C72,C76,C87,D10 |
Chr5:4514834 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B24,B47,B48,C2,C55 |
Chr5:4515302 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B10 |
Chr5:4515380 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B66,C54,C67 |
Chr5:4515855 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr5:4516047 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B36,C2 |
Chr5:4518141 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B11,B126,C54,C62 |
Chr5:4518539 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B91,C49 |
Chr5:4519173 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B134,C40 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057764053.1PF00560
LRR_1 159-181 aa
PF00560
LRR_1 183-205 aa
PF00560
LRR_1 280-301 aa
PF11721
Malectin 407-589 aa
PF00069
Pkinase 667-935 aa
PF07714
PK_Tyr_Ser-Thr 668-937 aa
XP_057764054.1PF00560
LRR_1 159-181 aa
PF00560
LRR_1 183-205 aa
PF00560
LRR_1 280-301 aa
PF11721
Malectin 475-550 aa
PF00069
Pkinase 628-896 aa
PF07714
PK_Tyr_Ser-Thr 629-898 aa
XP_057764055.1PF00560
LRR_1 21-43 aa
PF00560
LRR_1 118-139 aa
PF11721
Malectin 245-427 aa
PF00069
Pkinase 505-773 aa
PF07714
PK_Tyr_Ser-Thr 506-775 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057764053.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 159 | 181 | 3.3e-21 | 71.5 | Leucine Rich Repeat |
XP_057764053.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 183 | 205 | 3.3e-21 | 71.5 | Leucine Rich Repeat |
XP_057764053.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 280 | 301 | 3.3e-21 | 71.5 | Leucine Rich Repeat |
XP_057764053.1 |
Pfam | PF11721 |
Malectin | Domain | 407 | 589 | 2.4e-35 | 122.7 | Malectin domain |
XP_057764053.1 |
Pfam | PF00069 |
Pkinase | Domain | 667 | 935 | 2.6e-46 | 158.9 | Protein kinase domain |
XP_057764053.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 668 | 937 | 5.5e-52 | 177.3 | Protein tyrosine and serine/threonine kinase |
XP_057764054.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 159 | 181 | 2.2e-21 | 72.1 | Leucine Rich Repeat |
XP_057764054.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 183 | 205 | 2.2e-21 | 72.1 | Leucine Rich Repeat |
XP_057764054.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 280 | 301 | 2.2e-21 | 72.1 | Leucine Rich Repeat |
XP_057764054.1 |
Pfam | PF11721 |
Malectin | Domain | 475 | 550 | 3e-17 | 63.8 | Malectin domain |
XP_057764054.1 |
Pfam | PF00069 |
Pkinase | Domain | 628 | 896 | 2.5e-46 | 158.9 | Protein kinase domain |
XP_057764054.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 629 | 898 | 5.1e-52 | 177.5 | Protein tyrosine and serine/threonine kinase |
XP_057764055.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 21 | 43 | 6.3e-15 | 52.8 | Leucine Rich Repeat |
XP_057764055.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 118 | 139 | 6.3e-15 | 52.8 | Leucine Rich Repeat |
XP_057764055.1 |
Pfam | PF11721 |
Malectin | Domain | 245 | 427 | 1.9e-35 | 123.0 | Malectin domain |
XP_057764055.1 |
Pfam | PF00069 |
Pkinase | Domain | 505 | 773 | 1.9e-46 | 159.3 | Protein kinase domain |
XP_057764055.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 506 | 775 | 3.8e-52 | 177.9 | Protein tyrosine and serine/threonine kinase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
3 records
下载 cDNA FASTA3 records
下载 CDS FASTA3 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。