当前解析结果
SmilChr05G000610| 统一新 Gene ID | SmilChr05G000610 |
|---|---|
| 名称 | SmilChr05G000610 |
| 描述 | protein STICHEL-like 3 |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 4589464 - 4593654 / - |
| NCBI Gene ID | LOC130985232 |
|---|---|
| GeneID | 130985232 |
| locus_tag | - |
| NCBI Name | LOC130985232 |
| 原始查询 | LOC130985232 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | protein STICHEL-like 3 |
| 产物 | protein STICHEL-like 3 |
| Arabidopsis | AT4G18820 (AT4G18820)AAA-type ATPase family protein [Source:NCBI gene (formerly Entrezgene);Acc:827616] identity=48.5; qcov=1.14; evalue=0; confidence=high |
| Rice | Os05g0529600- identity=44.9; qcov=0.908; evalue=0; confidence=medium |
| GO | GO:0003677 (DNA binding); GO:0003689 (DNA clamp loader activity); GO:0003887 (DNA-directed DNA polymerase activity); GO:0005524 (ATP binding); GO:0005634 (nucleus); GO:0005663 (DNA replication factor C complex); GO:0006261 (DNA-templated DNA replication); GO:0006281 (DNA repair); GO:0009360 (DNA polymerase III complex) |
| KEGG | - |
| Pfam | PF00004 (AAA); PF12169 (DNA_pol3_gamma3); PF13177 (DNA_pol3_delta2); PF23007 (DnaA_N-like_STI) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130985232 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057764056.1 |
| 2 | Cytosol | 细胞质基质 | 0.20000 | XP_057764056.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057764056.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057764056.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057764056.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:4590441 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B111,C2 |
Chr5:4590450 |
A |
AC |
1bp_insertion | frameshift_variant | 111 | A15,A16,A18,A20,A22,A25,A4,A6,A7,A8,B101,B103,B105,B107,B11,B111,B113,B114,B115,B120,B122,B126,B127,B128,B130,B131,B135,B136,B138,B14,B16,B17,B18,B19,B20,B21,B22,B24,B28,B3,B30,B31,B32,B33,B34,B36,B38,B39,B40,B41,B44,B48,B50,B52,B53,B55,B56,B57,B6,B61,B62,B63,B65,B66,B72,B78,B79,B80,B81,B83,B89,B91,B93,B95,B96,B97,B98,C14,C17,C19,C20,C21,C26,C27,C28,C30,C31,C35,C4,C42,C43,C5,C50,C51,C59,C6,C60,C62,C63,C65,C70,C73,C75,C78,C80,C85,D1,D11,D6,D8,D9 |
Chr5:4590860 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B49 |
Chr5:4591190 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C23 |
Chr5:4591370 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B2 |
Chr5:4591406 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr5:4591408 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C68 |
Chr5:4591492 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr5:4591493 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr5:4591577 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A8,B41 |
Chr5:4591580 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B113,B128,B2 |
Chr5:4591706 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B14 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057764056.1PF13177
DNA_pol3_delta2 360-517 aa
PF00004
AAA 381-513 aa
PF12169
DNA_pol3_gamma3 574-692 aa
PF23007
DnaA_N-like_STI 734-811 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057764056.1 |
Pfam | PF13177 |
DNA_pol3_delta2 | Domain | 360 | 517 | 2.3e-25 | 90.2 | DNA polymerase III, delta subunit |
XP_057764056.1 |
Pfam | PF00004 |
AAA | Domain | 381 | 513 | 4.7e-09 | 37.5 | ATPase family associated with various cellular activities (AAA) |
XP_057764056.1 |
Pfam | PF12169 |
DNA_pol3_gamma3 | Family | 574 | 692 | 6.2e-07 | 30.0 | DNA polymerase III subunits gamma and tau domain III |
XP_057764056.1 |
Pfam | PF23007 |
DnaA_N-like_STI | Domain | 734 | 811 | 5.6e-25 | 88.0 | STICHEL, DnaA_N-like alpha-beta domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。